Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse18; day2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS16635 and HMPREF1058_RS16630 are separated by 169 nucleotides HMPREF1058_RS16630 and HMPREF1058_RS16625 are separated by 236 nucleotides HMPREF1058_RS16625 and HMPREF1058_RS16620 are separated by 18 nucleotides
HMPREF1058_RS16635: HMPREF1058_RS16635 - sodium:glutamate symporter, at 630,154 to 631,533
_RS16635
HMPREF1058_RS16630: HMPREF1058_RS16630 - DMP19 family protein, at 631,703 to 632,212
_RS16630
HMPREF1058_RS16625: HMPREF1058_RS16625 - hypothetical protein, at 632,449 to 633,150
_RS16625
HMPREF1058_RS16620: HMPREF1058_RS16620 - GGGtGRT protein, at 633,169 to 634,179
_RS16620
Position (kb) 632
633
634 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 631.501 kb on + strand at 631.518 kb on + strand at 631.573 kb on + strand at 631.596 kb on - strand at 631.617 kb on + strand at 631.617 kb on + strand at 631.622 kb on + strand at 631.626 kb on + strand at 631.653 kb on + strand at 631.688 kb on - strand at 631.744 kb on - strand at 631.825 kb on - strand, within HMPREF1058_RS16630 at 631.825 kb on - strand, within HMPREF1058_RS16630 at 631.969 kb on + strand, within HMPREF1058_RS16630 at 631.972 kb on - strand, within HMPREF1058_RS16630 at 631.972 kb on - strand, within HMPREF1058_RS16630 at 632.119 kb on - strand, within HMPREF1058_RS16630 at 632.119 kb on - strand, within HMPREF1058_RS16630 at 632.129 kb on - strand, within HMPREF1058_RS16630 at 632.216 kb on + strand at 632.222 kb on + strand at 632.222 kb on + strand at 632.223 kb on - strand at 632.224 kb on + strand at 632.224 kb on + strand at 632.224 kb on + strand at 632.225 kb on - strand at 632.228 kb on - strand at 632.229 kb on + strand at 632.234 kb on - strand at 632.280 kb on + strand at 632.316 kb on + strand at 632.321 kb on - strand at 632.327 kb on - strand at 632.390 kb on + strand at 632.417 kb on + strand at 632.616 kb on + strand, within HMPREF1058_RS16625 at 632.621 kb on + strand, within HMPREF1058_RS16625 at 632.633 kb on + strand, within HMPREF1058_RS16625 at 632.633 kb on + strand, within HMPREF1058_RS16625 at 632.736 kb on - strand, within HMPREF1058_RS16625 at 632.900 kb on + strand, within HMPREF1058_RS16625 at 632.904 kb on + strand, within HMPREF1058_RS16625 at 632.905 kb on - strand, within HMPREF1058_RS16625 at 632.905 kb on - strand, within HMPREF1058_RS16625 at 632.911 kb on + strand, within HMPREF1058_RS16625 at 632.911 kb on + strand, within HMPREF1058_RS16625 at 632.973 kb on - strand, within HMPREF1058_RS16625 at 633.169 kb on - strand at 633.300 kb on + strand, within HMPREF1058_RS16620 at 633.300 kb on + strand, within HMPREF1058_RS16620 at 633.324 kb on + strand, within HMPREF1058_RS16620 at 633.325 kb on - strand, within HMPREF1058_RS16620 at 633.445 kb on - strand, within HMPREF1058_RS16620 at 633.505 kb on - strand, within HMPREF1058_RS16620 at 633.525 kb on + strand, within HMPREF1058_RS16620 at 633.609 kb on - strand, within HMPREF1058_RS16620 at 633.612 kb on + strand, within HMPREF1058_RS16620 at 633.630 kb on + strand, within HMPREF1058_RS16620 at 633.675 kb on + strand, within HMPREF1058_RS16620 at 633.687 kb on + strand, within HMPREF1058_RS16620 at 633.735 kb on - strand, within HMPREF1058_RS16620 at 633.816 kb on + strand, within HMPREF1058_RS16620 at 633.817 kb on - strand, within HMPREF1058_RS16620 at 633.836 kb on + strand, within HMPREF1058_RS16620 at 633.861 kb on + strand, within HMPREF1058_RS16620 at 633.897 kb on + strand, within HMPREF1058_RS16620 at 633.898 kb on - strand, within HMPREF1058_RS16620 at 633.901 kb on + strand, within HMPREF1058_RS16620 at 633.901 kb on + strand, within HMPREF1058_RS16620 at 633.902 kb on - strand, within HMPREF1058_RS16620 at 633.927 kb on + strand, within HMPREF1058_RS16620 at 633.969 kb on + strand, within HMPREF1058_RS16620 at 634.035 kb on + strand, within HMPREF1058_RS16620 at 634.035 kb on + strand, within HMPREF1058_RS16620 at 634.127 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse18; day2 remove 631,501 + -0.2 631,518 + +0.1 631,573 + +0.4 631,596 - -0.6 631,617 + -0.8 631,617 + -0.5 631,622 + +0.2 631,626 + +0.4 631,653 + +0.3 631,688 - -0.0 631,744 - +0.4 631,825 - HMPREF1058_RS16630 0.24 +1.1 631,825 - HMPREF1058_RS16630 0.24 -0.6 631,969 + HMPREF1058_RS16630 0.52 -0.3 631,972 - HMPREF1058_RS16630 0.53 +0.1 631,972 - HMPREF1058_RS16630 0.53 +0.7 632,119 - HMPREF1058_RS16630 0.82 +0.1 632,119 - HMPREF1058_RS16630 0.82 -0.0 632,129 - HMPREF1058_RS16630 0.84 -0.8 632,216 + -0.0 632,222 + -0.3 632,222 + -0.1 632,223 - -1.5 632,224 + -0.4 632,224 + +1.1 632,224 + -0.1 632,225 - +0.4 632,228 - -0.7 632,229 + -0.9 632,234 - -0.6 632,280 + +0.2 632,316 + -0.0 632,321 - -0.7 632,327 - +0.7 632,390 + +0.2 632,417 + +1.0 632,616 + HMPREF1058_RS16625 0.24 -3.5 632,621 + HMPREF1058_RS16625 0.25 -3.7 632,633 + HMPREF1058_RS16625 0.26 -3.3 632,633 + HMPREF1058_RS16625 0.26 -3.5 632,736 - HMPREF1058_RS16625 0.41 -3.9 632,900 + HMPREF1058_RS16625 0.64 -2.0 632,904 + HMPREF1058_RS16625 0.65 -3.6 632,905 - HMPREF1058_RS16625 0.65 -2.5 632,905 - HMPREF1058_RS16625 0.65 -3.6 632,911 + HMPREF1058_RS16625 0.66 -2.7 632,911 + HMPREF1058_RS16625 0.66 +0.6 632,973 - HMPREF1058_RS16625 0.75 -2.7 633,169 - -1.0 633,300 + HMPREF1058_RS16620 0.13 -2.3 633,300 + HMPREF1058_RS16620 0.13 -2.0 633,324 + HMPREF1058_RS16620 0.15 -2.0 633,325 - HMPREF1058_RS16620 0.15 -0.8 633,445 - HMPREF1058_RS16620 0.27 -2.8 633,505 - HMPREF1058_RS16620 0.33 -2.8 633,525 + HMPREF1058_RS16620 0.35 -3.3 633,609 - HMPREF1058_RS16620 0.44 -2.4 633,612 + HMPREF1058_RS16620 0.44 -2.9 633,630 + HMPREF1058_RS16620 0.46 -2.6 633,675 + HMPREF1058_RS16620 0.50 -1.7 633,687 + HMPREF1058_RS16620 0.51 -2.5 633,735 - HMPREF1058_RS16620 0.56 -2.2 633,816 + HMPREF1058_RS16620 0.64 -3.0 633,817 - HMPREF1058_RS16620 0.64 -1.3 633,836 + HMPREF1058_RS16620 0.66 -3.0 633,861 + HMPREF1058_RS16620 0.68 -3.2 633,897 + HMPREF1058_RS16620 0.72 -3.2 633,898 - HMPREF1058_RS16620 0.72 -1.9 633,901 + HMPREF1058_RS16620 0.72 -2.7 633,901 + HMPREF1058_RS16620 0.72 -2.7 633,902 - HMPREF1058_RS16620 0.73 -3.4 633,927 + HMPREF1058_RS16620 0.75 -1.3 633,969 + HMPREF1058_RS16620 0.79 -1.6 634,035 + HMPREF1058_RS16620 0.86 -3.2 634,035 + HMPREF1058_RS16620 0.86 -0.0 634,127 + -4.1
Or see this region's nucleotide sequence