Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS16500

Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse18; day2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS16505 and HMPREF1058_RS16500 are separated by 27 nucleotidesHMPREF1058_RS16500 and HMPREF1058_RS16495 are separated by 23 nucleotidesHMPREF1058_RS16495 and HMPREF1058_RS16490 are separated by 1 nucleotides HMPREF1058_RS16505: HMPREF1058_RS16505 - acyl-CoA carboxylase subunit beta, at 654,544 to 656,097 _RS16505 HMPREF1058_RS16500: HMPREF1058_RS16500 - OadG family protein, at 656,125 to 657,054 _RS16500 HMPREF1058_RS16495: HMPREF1058_RS16495 - biotin/lipoyl-binding protein, at 657,078 to 657,509 _RS16495 HMPREF1058_RS16490: HMPREF1058_RS16490 - sodium ion-translocating decarboxylase subunit beta, at 657,511 to 658,671 _RS16490 Position (kb) 656 657 658Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 655.137 kb on + strand, within HMPREF1058_RS16505at 655.278 kb on - strand, within HMPREF1058_RS16505at 655.283 kb on - strand, within HMPREF1058_RS16505at 655.319 kb on + strand, within HMPREF1058_RS16505at 655.394 kb on - strand, within HMPREF1058_RS16505at 655.398 kb on + strand, within HMPREF1058_RS16505at 655.399 kb on - strand, within HMPREF1058_RS16505at 655.399 kb on - strand, within HMPREF1058_RS16505at 655.402 kb on + strand, within HMPREF1058_RS16505at 655.402 kb on + strand, within HMPREF1058_RS16505at 655.425 kb on - strand, within HMPREF1058_RS16505at 655.464 kb on + strand, within HMPREF1058_RS16505at 655.508 kb on + strand, within HMPREF1058_RS16505at 655.512 kb on + strand, within HMPREF1058_RS16505at 655.513 kb on - strand, within HMPREF1058_RS16505at 655.513 kb on - strand, within HMPREF1058_RS16505at 655.628 kb on + strand, within HMPREF1058_RS16505at 655.628 kb on + strand, within HMPREF1058_RS16505at 655.629 kb on - strand, within HMPREF1058_RS16505at 655.775 kb on + strand, within HMPREF1058_RS16505at 655.776 kb on - strand, within HMPREF1058_RS16505at 655.810 kb on + strand, within HMPREF1058_RS16505at 655.865 kb on + strand, within HMPREF1058_RS16505at 655.870 kb on + strand, within HMPREF1058_RS16505at 655.973 kb on - strandat 656.085 kb on + strandat 656.086 kb on - strandat 656.141 kb on + strandat 656.142 kb on - strandat 656.367 kb on + strand, within HMPREF1058_RS16500at 656.371 kb on + strand, within HMPREF1058_RS16500at 656.377 kb on - strand, within HMPREF1058_RS16500at 656.393 kb on + strand, within HMPREF1058_RS16500at 656.470 kb on - strand, within HMPREF1058_RS16500at 656.641 kb on + strand, within HMPREF1058_RS16500at 656.642 kb on - strand, within HMPREF1058_RS16500at 656.754 kb on - strand, within HMPREF1058_RS16500at 656.840 kb on + strand, within HMPREF1058_RS16500at 656.948 kb on + strand, within HMPREF1058_RS16500at 656.999 kb on - strandat 656.999 kb on - strandat 657.052 kb on + strandat 657.113 kb on - strandat 657.134 kb on + strand, within HMPREF1058_RS16495at 657.137 kb on - strand, within HMPREF1058_RS16495at 657.137 kb on - strand, within HMPREF1058_RS16495at 657.263 kb on + strand, within HMPREF1058_RS16495at 657.263 kb on + strand, within HMPREF1058_RS16495at 657.347 kb on - strand, within HMPREF1058_RS16495at 657.457 kb on + strand, within HMPREF1058_RS16495at 657.461 kb on + strand, within HMPREF1058_RS16495at 657.508 kb on - strandat 657.546 kb on - strandat 657.546 kb on - strandat 657.562 kb on + strandat 657.562 kb on + strandat 657.563 kb on - strandat 657.563 kb on - strandat 657.564 kb on + strandat 657.565 kb on - strandat 657.595 kb on - strandat 657.600 kb on - strandat 657.612 kb on - strandat 657.618 kb on - strandat 657.627 kb on - strand, within HMPREF1058_RS16490at 657.627 kb on - strand, within HMPREF1058_RS16490at 657.628 kb on + strand, within HMPREF1058_RS16490at 657.629 kb on - strand, within HMPREF1058_RS16490at 657.699 kb on + strand, within HMPREF1058_RS16490at 657.699 kb on + strand, within HMPREF1058_RS16490at 657.740 kb on - strand, within HMPREF1058_RS16490at 657.740 kb on - strand, within HMPREF1058_RS16490at 657.740 kb on - strand, within HMPREF1058_RS16490at 657.740 kb on - strand, within HMPREF1058_RS16490at 657.767 kb on + strand, within HMPREF1058_RS16490at 657.770 kb on - strand, within HMPREF1058_RS16490at 657.781 kb on - strand, within HMPREF1058_RS16490at 657.804 kb on + strand, within HMPREF1058_RS16490at 657.812 kb on + strand, within HMPREF1058_RS16490at 657.908 kb on - strand, within HMPREF1058_RS16490at 658.011 kb on - strand, within HMPREF1058_RS16490at 658.048 kb on + strand, within HMPREF1058_RS16490at 658.054 kb on + strand, within HMPREF1058_RS16490

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Per-strain Table

Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse18; day2
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655,137 + HMPREF1058_RS16505 0.38 -2.4
655,278 - HMPREF1058_RS16505 0.47 -2.7
655,283 - HMPREF1058_RS16505 0.48 -4.1
655,319 + HMPREF1058_RS16505 0.50 -3.2
655,394 - HMPREF1058_RS16505 0.55 -2.0
655,398 + HMPREF1058_RS16505 0.55 -2.4
655,399 - HMPREF1058_RS16505 0.55 -2.5
655,399 - HMPREF1058_RS16505 0.55 -3.4
655,402 + HMPREF1058_RS16505 0.55 -3.0
655,402 + HMPREF1058_RS16505 0.55 -2.1
655,425 - HMPREF1058_RS16505 0.57 -1.8
655,464 + HMPREF1058_RS16505 0.59 -3.4
655,508 + HMPREF1058_RS16505 0.62 -3.8
655,512 + HMPREF1058_RS16505 0.62 -2.6
655,513 - HMPREF1058_RS16505 0.62 -4.6
655,513 - HMPREF1058_RS16505 0.62 -4.9
655,628 + HMPREF1058_RS16505 0.70 -2.4
655,628 + HMPREF1058_RS16505 0.70 -4.3
655,629 - HMPREF1058_RS16505 0.70 -3.3
655,775 + HMPREF1058_RS16505 0.79 -2.8
655,776 - HMPREF1058_RS16505 0.79 -2.8
655,810 + HMPREF1058_RS16505 0.81 -2.8
655,865 + HMPREF1058_RS16505 0.85 -4.5
655,870 + HMPREF1058_RS16505 0.85 -3.9
655,973 - -3.7
656,085 + -3.4
656,086 - -3.6
656,141 + -3.0
656,142 - -2.6
656,367 + HMPREF1058_RS16500 0.26 -4.8
656,371 + HMPREF1058_RS16500 0.26 -4.1
656,377 - HMPREF1058_RS16500 0.27 -2.4
656,393 + HMPREF1058_RS16500 0.29 -4.7
656,470 - HMPREF1058_RS16500 0.37 -2.8
656,641 + HMPREF1058_RS16500 0.55 -2.0
656,642 - HMPREF1058_RS16500 0.56 -4.4
656,754 - HMPREF1058_RS16500 0.68 -3.9
656,840 + HMPREF1058_RS16500 0.77 -4.4
656,948 + HMPREF1058_RS16500 0.88 -3.0
656,999 - -2.6
656,999 - -3.2
657,052 + -0.3
657,113 - -1.6
657,134 + HMPREF1058_RS16495 0.13 -2.8
657,137 - HMPREF1058_RS16495 0.14 -2.5
657,137 - HMPREF1058_RS16495 0.14 -3.2
657,263 + HMPREF1058_RS16495 0.43 -3.1
657,263 + HMPREF1058_RS16495 0.43 -3.3
657,347 - HMPREF1058_RS16495 0.62 -2.6
657,457 + HMPREF1058_RS16495 0.88 -2.8
657,461 + HMPREF1058_RS16495 0.89 -2.8
657,508 - -1.9
657,546 - -2.3
657,546 - -1.5
657,562 + -0.7
657,562 + +0.3
657,563 - -2.0
657,563 - -4.5
657,564 + -2.0
657,565 - -2.0
657,595 - -2.4
657,600 - -1.3
657,612 - -2.1
657,618 - -1.2
657,627 - HMPREF1058_RS16490 0.10 -3.6
657,627 - HMPREF1058_RS16490 0.10 -1.9
657,628 + HMPREF1058_RS16490 0.10 -0.3
657,629 - HMPREF1058_RS16490 0.10 -1.5
657,699 + HMPREF1058_RS16490 0.16 -1.0
657,699 + HMPREF1058_RS16490 0.16 -1.7
657,740 - HMPREF1058_RS16490 0.20 -0.6
657,740 - HMPREF1058_RS16490 0.20 -1.7
657,740 - HMPREF1058_RS16490 0.20 -2.7
657,740 - HMPREF1058_RS16490 0.20 -0.8
657,767 + HMPREF1058_RS16490 0.22 -2.4
657,770 - HMPREF1058_RS16490 0.22 -2.1
657,781 - HMPREF1058_RS16490 0.23 -3.2
657,804 + HMPREF1058_RS16490 0.25 +0.8
657,812 + HMPREF1058_RS16490 0.26 -0.9
657,908 - HMPREF1058_RS16490 0.34 -2.3
658,011 - HMPREF1058_RS16490 0.43 -2.3
658,048 + HMPREF1058_RS16490 0.46 -1.3
658,054 + HMPREF1058_RS16490 0.47 -0.0

Or see this region's nucleotide sequence