Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse18; day2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS16255 and HMPREF1058_RS16250 are separated by 26 nucleotides HMPREF1058_RS16250 and HMPREF1058_RS16245 overlap by 1 nucleotides HMPREF1058_RS16245 and HMPREF1058_RS16240 are separated by 77 nucleotides
HMPREF1058_RS16255: HMPREF1058_RS16255 - isochorismate synthase, at 721,335 to 722,477
_RS16255
HMPREF1058_RS16250: HMPREF1058_RS16250 - 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylic-acid synthase, at 722,504 to 724,177
_RS16250
HMPREF1058_RS16245: HMPREF1058_RS16245 - 1,4-dihydroxy-2-naphthoyl-CoA synthase, at 724,177 to 724,998
_RS16245
HMPREF1058_RS16240: HMPREF1058_RS16240 - o-succinylbenzoate synthase, at 725,076 to 726,131
_RS16240
Position (kb) 722
723
724
725 Strain fitness (log2 ratio) -2
-1
0
1
2 at 721.550 kb on - strand, within HMPREF1058_RS16255 at 721.699 kb on - strand, within HMPREF1058_RS16255 at 721.701 kb on - strand, within HMPREF1058_RS16255 at 721.854 kb on + strand, within HMPREF1058_RS16255 at 721.854 kb on + strand, within HMPREF1058_RS16255 at 721.855 kb on - strand, within HMPREF1058_RS16255 at 721.855 kb on - strand, within HMPREF1058_RS16255 at 721.855 kb on - strand, within HMPREF1058_RS16255 at 722.022 kb on + strand, within HMPREF1058_RS16255 at 722.022 kb on + strand, within HMPREF1058_RS16255 at 722.023 kb on - strand, within HMPREF1058_RS16255 at 722.023 kb on - strand, within HMPREF1058_RS16255 at 722.034 kb on + strand, within HMPREF1058_RS16255 at 722.090 kb on + strand, within HMPREF1058_RS16255 at 722.114 kb on - strand, within HMPREF1058_RS16255 at 722.159 kb on + strand, within HMPREF1058_RS16255 at 722.160 kb on - strand, within HMPREF1058_RS16255 at 722.266 kb on - strand, within HMPREF1058_RS16255 at 722.316 kb on + strand, within HMPREF1058_RS16255 at 722.316 kb on + strand, within HMPREF1058_RS16255 at 722.316 kb on + strand, within HMPREF1058_RS16255 at 722.317 kb on - strand, within HMPREF1058_RS16255 at 722.317 kb on - strand, within HMPREF1058_RS16255 at 722.467 kb on + strand at 722.476 kb on - strand at 722.503 kb on - strand at 722.507 kb on + strand at 722.526 kb on + strand at 722.607 kb on + strand at 722.608 kb on - strand at 722.611 kb on + strand at 722.612 kb on - strand at 722.625 kb on + strand at 722.626 kb on - strand at 722.829 kb on + strand, within HMPREF1058_RS16250 at 722.910 kb on + strand, within HMPREF1058_RS16250 at 722.914 kb on + strand, within HMPREF1058_RS16250 at 722.914 kb on + strand, within HMPREF1058_RS16250 at 722.994 kb on + strand, within HMPREF1058_RS16250 at 722.994 kb on + strand, within HMPREF1058_RS16250 at 722.995 kb on - strand, within HMPREF1058_RS16250 at 722.995 kb on - strand, within HMPREF1058_RS16250 at 722.995 kb on - strand, within HMPREF1058_RS16250 at 722.998 kb on + strand, within HMPREF1058_RS16250 at 723.057 kb on + strand, within HMPREF1058_RS16250 at 723.107 kb on - strand, within HMPREF1058_RS16250 at 723.107 kb on - strand, within HMPREF1058_RS16250 at 723.212 kb on - strand, within HMPREF1058_RS16250 at 723.293 kb on + strand, within HMPREF1058_RS16250 at 723.337 kb on - strand, within HMPREF1058_RS16250 at 723.343 kb on + strand, within HMPREF1058_RS16250 at 723.344 kb on - strand, within HMPREF1058_RS16250 at 723.590 kb on + strand, within HMPREF1058_RS16250 at 723.741 kb on + strand, within HMPREF1058_RS16250 at 723.827 kb on + strand, within HMPREF1058_RS16250 at 723.827 kb on + strand, within HMPREF1058_RS16250 at 723.858 kb on - strand at 723.972 kb on - strand, within HMPREF1058_RS16250 at 724.010 kb on - strand at 724.145 kb on + strand at 724.146 kb on - strand at 724.146 kb on - strand at 724.473 kb on - strand, within HMPREF1058_RS16245 at 724.473 kb on - strand, within HMPREF1058_RS16245 at 724.497 kb on + strand, within HMPREF1058_RS16245 at 724.616 kb on + strand, within HMPREF1058_RS16245 at 724.877 kb on + strand, within HMPREF1058_RS16245 at 724.878 kb on - strand, within HMPREF1058_RS16245 at 724.909 kb on + strand, within HMPREF1058_RS16245 at 724.909 kb on + strand, within HMPREF1058_RS16245 at 724.910 kb on - strand, within HMPREF1058_RS16245 at 725.143 kb on + strand at 725.143 kb on + strand at 725.145 kb on + strand at 725.145 kb on + strand at 725.145 kb on + strand at 725.147 kb on + strand at 725.161 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse18; day2 remove 721,550 - HMPREF1058_RS16255 0.19 +0.0 721,699 - HMPREF1058_RS16255 0.32 +0.3 721,701 - HMPREF1058_RS16255 0.32 +0.1 721,854 + HMPREF1058_RS16255 0.45 +0.6 721,854 + HMPREF1058_RS16255 0.45 -0.4 721,855 - HMPREF1058_RS16255 0.45 +1.1 721,855 - HMPREF1058_RS16255 0.45 +0.9 721,855 - HMPREF1058_RS16255 0.45 +0.7 722,022 + HMPREF1058_RS16255 0.60 +1.2 722,022 + HMPREF1058_RS16255 0.60 +0.3 722,023 - HMPREF1058_RS16255 0.60 +0.7 722,023 - HMPREF1058_RS16255 0.60 +1.0 722,034 + HMPREF1058_RS16255 0.61 +0.3 722,090 + HMPREF1058_RS16255 0.66 +0.5 722,114 - HMPREF1058_RS16255 0.68 +0.9 722,159 + HMPREF1058_RS16255 0.72 +0.8 722,160 - HMPREF1058_RS16255 0.72 +0.5 722,266 - HMPREF1058_RS16255 0.81 +1.3 722,316 + HMPREF1058_RS16255 0.86 +0.4 722,316 + HMPREF1058_RS16255 0.86 -0.1 722,316 + HMPREF1058_RS16255 0.86 +1.4 722,317 - HMPREF1058_RS16255 0.86 +0.0 722,317 - HMPREF1058_RS16255 0.86 +0.5 722,467 + +1.4 722,476 - +0.1 722,503 - +0.1 722,507 + +0.7 722,526 + +1.1 722,607 + +0.5 722,608 - +1.7 722,611 + +1.0 722,612 - +0.4 722,625 + +0.4 722,626 - +1.5 722,829 + HMPREF1058_RS16250 0.19 +0.1 722,910 + HMPREF1058_RS16250 0.24 +0.4 722,914 + HMPREF1058_RS16250 0.24 +0.7 722,914 + HMPREF1058_RS16250 0.24 +1.1 722,994 + HMPREF1058_RS16250 0.29 +1.3 722,994 + HMPREF1058_RS16250 0.29 +0.7 722,995 - HMPREF1058_RS16250 0.29 +1.1 722,995 - HMPREF1058_RS16250 0.29 +0.4 722,995 - HMPREF1058_RS16250 0.29 +0.7 722,998 + HMPREF1058_RS16250 0.30 +0.9 723,057 + HMPREF1058_RS16250 0.33 +0.6 723,107 - HMPREF1058_RS16250 0.36 +1.2 723,107 - HMPREF1058_RS16250 0.36 +1.2 723,212 - HMPREF1058_RS16250 0.42 +0.3 723,293 + HMPREF1058_RS16250 0.47 +0.9 723,337 - HMPREF1058_RS16250 0.50 +0.8 723,343 + HMPREF1058_RS16250 0.50 +0.5 723,344 - HMPREF1058_RS16250 0.50 +0.7 723,590 + HMPREF1058_RS16250 0.65 +1.1 723,741 + HMPREF1058_RS16250 0.74 +0.7 723,827 + HMPREF1058_RS16250 0.79 +0.8 723,827 + HMPREF1058_RS16250 0.79 -0.2 723,858 - +0.7 723,972 - HMPREF1058_RS16250 0.88 +0.2 724,010 - +0.3 724,145 + +2.2 724,146 - +0.9 724,146 - +2.1 724,473 - HMPREF1058_RS16245 0.36 +0.3 724,473 - HMPREF1058_RS16245 0.36 -1.0 724,497 + HMPREF1058_RS16245 0.39 -0.5 724,616 + HMPREF1058_RS16245 0.53 -0.4 724,877 + HMPREF1058_RS16245 0.85 +0.5 724,878 - HMPREF1058_RS16245 0.85 -1.1 724,909 + HMPREF1058_RS16245 0.89 -1.9 724,909 + HMPREF1058_RS16245 0.89 +0.2 724,910 - HMPREF1058_RS16245 0.89 -1.6 725,143 + -0.0 725,143 + -0.7 725,145 + -0.9 725,145 + -0.1 725,145 + -1.0 725,147 + -1.3 725,161 + -0.3
Or see this region's nucleotide sequence