Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse18; day2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS15440 and HMPREF1058_RS15435 overlap by 9 nucleotides HMPREF1058_RS15435 and HMPREF1058_RS15430 are separated by 125 nucleotides HMPREF1058_RS15430 and HMPREF1058_RS15425 are separated by 19 nucleotides
HMPREF1058_RS15440: HMPREF1058_RS15440 - tetratricopeptide repeat protein, at 920,691 to 922,868
_RS15440
HMPREF1058_RS15435: HMPREF1058_RS15435 - hypothetical protein, at 922,860 to 923,681
_RS15435
HMPREF1058_RS15430: HMPREF1058_RS15430 - aspartate-alanine antiporter, at 923,807 to 925,507
_RS15430
HMPREF1058_RS15425: HMPREF1058_RS15425 - bifunctional aspartate transaminase/aspartate 4-decarboxylase, at 925,527 to 927,167
_RS15425
Position (kb) 923
924
925
926 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 922.813 kb on + strand at 922.834 kb on + strand at 922.834 kb on + strand at 922.835 kb on - strand at 922.844 kb on + strand at 922.845 kb on - strand at 922.874 kb on + strand at 922.876 kb on + strand at 922.877 kb on - strand at 922.877 kb on - strand at 922.881 kb on + strand at 922.881 kb on + strand at 922.973 kb on + strand, within HMPREF1058_RS15435 at 922.974 kb on - strand, within HMPREF1058_RS15435 at 922.974 kb on - strand, within HMPREF1058_RS15435 at 922.975 kb on + strand, within HMPREF1058_RS15435 at 922.976 kb on - strand, within HMPREF1058_RS15435 at 922.998 kb on - strand, within HMPREF1058_RS15435 at 922.998 kb on - strand, within HMPREF1058_RS15435 at 922.998 kb on - strand, within HMPREF1058_RS15435 at 923.019 kb on + strand, within HMPREF1058_RS15435 at 923.099 kb on - strand, within HMPREF1058_RS15435 at 923.144 kb on - strand, within HMPREF1058_RS15435 at 923.148 kb on - strand, within HMPREF1058_RS15435 at 923.152 kb on + strand, within HMPREF1058_RS15435 at 923.157 kb on - strand, within HMPREF1058_RS15435 at 923.174 kb on + strand, within HMPREF1058_RS15435 at 923.174 kb on + strand, within HMPREF1058_RS15435 at 923.175 kb on - strand, within HMPREF1058_RS15435 at 923.247 kb on + strand, within HMPREF1058_RS15435 at 923.436 kb on - strand, within HMPREF1058_RS15435 at 923.436 kb on - strand, within HMPREF1058_RS15435 at 923.473 kb on - strand, within HMPREF1058_RS15435 at 923.489 kb on - strand, within HMPREF1058_RS15435 at 923.594 kb on - strand, within HMPREF1058_RS15435 at 923.644 kb on - strand at 923.691 kb on - strand at 923.691 kb on - strand at 923.691 kb on - strand at 923.791 kb on - strand at 923.791 kb on - strand at 923.820 kb on + strand at 923.821 kb on - strand at 923.937 kb on + strand at 923.940 kb on + strand at 923.968 kb on + strand at 923.969 kb on - strand at 923.969 kb on - strand at 924.105 kb on + strand, within HMPREF1058_RS15430 at 924.105 kb on + strand, within HMPREF1058_RS15430 at 924.105 kb on + strand, within HMPREF1058_RS15430 at 924.106 kb on - strand, within HMPREF1058_RS15430 at 924.106 kb on - strand, within HMPREF1058_RS15430 at 924.132 kb on + strand, within HMPREF1058_RS15430 at 924.207 kb on + strand, within HMPREF1058_RS15430 at 924.207 kb on + strand, within HMPREF1058_RS15430 at 924.223 kb on + strand, within HMPREF1058_RS15430 at 924.223 kb on + strand, within HMPREF1058_RS15430 at 924.244 kb on - strand, within HMPREF1058_RS15430 at 924.266 kb on - strand, within HMPREF1058_RS15430 at 924.298 kb on - strand, within HMPREF1058_RS15430 at 924.789 kb on + strand, within HMPREF1058_RS15430 at 924.890 kb on - strand, within HMPREF1058_RS15430 at 924.890 kb on - strand, within HMPREF1058_RS15430 at 924.943 kb on - strand, within HMPREF1058_RS15430 at 924.947 kb on + strand, within HMPREF1058_RS15430 at 924.951 kb on + strand, within HMPREF1058_RS15430 at 924.951 kb on + strand, within HMPREF1058_RS15430 at 924.951 kb on + strand, within HMPREF1058_RS15430 at 924.981 kb on + strand, within HMPREF1058_RS15430 at 925.012 kb on + strand, within HMPREF1058_RS15430 at 925.052 kb on - strand, within HMPREF1058_RS15430 at 925.095 kb on + strand, within HMPREF1058_RS15430 at 925.095 kb on + strand, within HMPREF1058_RS15430 at 925.096 kb on - strand, within HMPREF1058_RS15430 at 925.166 kb on - strand, within HMPREF1058_RS15430 at 925.170 kb on + strand, within HMPREF1058_RS15430 at 925.171 kb on - strand, within HMPREF1058_RS15430 at 925.224 kb on + strand, within HMPREF1058_RS15430 at 925.242 kb on + strand, within HMPREF1058_RS15430 at 925.249 kb on + strand, within HMPREF1058_RS15430 at 925.249 kb on + strand, within HMPREF1058_RS15430 at 925.250 kb on - strand, within HMPREF1058_RS15430 at 925.250 kb on - strand, within HMPREF1058_RS15430 at 925.250 kb on - strand, within HMPREF1058_RS15430 at 925.250 kb on - strand, within HMPREF1058_RS15430 at 925.264 kb on - strand, within HMPREF1058_RS15430 at 925.294 kb on - strand, within HMPREF1058_RS15430 at 925.316 kb on + strand, within HMPREF1058_RS15430 at 925.316 kb on + strand, within HMPREF1058_RS15430 at 925.317 kb on - strand, within HMPREF1058_RS15430 at 925.317 kb on - strand, within HMPREF1058_RS15430 at 925.320 kb on + strand, within HMPREF1058_RS15430 at 925.320 kb on + strand, within HMPREF1058_RS15430 at 925.320 kb on + strand, within HMPREF1058_RS15430 at 925.320 kb on + strand, within HMPREF1058_RS15430 at 925.395 kb on + strand at 925.433 kb on + strand at 925.460 kb on - strand at 925.460 kb on - strand at 925.474 kb on - strand at 925.492 kb on - strand at 925.522 kb on - strand at 925.538 kb on - strand at 925.676 kb on + strand at 925.677 kb on - strand at 925.872 kb on - strand, within HMPREF1058_RS15425 at 925.875 kb on + strand, within HMPREF1058_RS15425 at 925.878 kb on - strand, within HMPREF1058_RS15425 at 925.946 kb on - strand, within HMPREF1058_RS15425 at 925.961 kb on + strand, within HMPREF1058_RS15425 at 925.962 kb on - strand, within HMPREF1058_RS15425 at 926.094 kb on + strand, within HMPREF1058_RS15425 at 926.095 kb on - strand, within HMPREF1058_RS15425 at 926.098 kb on + strand, within HMPREF1058_RS15425 at 926.098 kb on + strand, within HMPREF1058_RS15425 at 926.146 kb on + strand, within HMPREF1058_RS15425 at 926.162 kb on + strand, within HMPREF1058_RS15425 at 926.162 kb on + strand, within HMPREF1058_RS15425 at 926.175 kb on + strand, within HMPREF1058_RS15425 at 926.175 kb on + strand, within HMPREF1058_RS15425 at 926.175 kb on + strand, within HMPREF1058_RS15425 at 926.176 kb on - strand, within HMPREF1058_RS15425 at 926.176 kb on - strand, within HMPREF1058_RS15425 at 926.179 kb on + strand, within HMPREF1058_RS15425 at 926.180 kb on - strand, within HMPREF1058_RS15425 at 926.180 kb on - strand, within HMPREF1058_RS15425 at 926.259 kb on - strand, within HMPREF1058_RS15425 at 926.268 kb on + strand, within HMPREF1058_RS15425 at 926.269 kb on - strand, within HMPREF1058_RS15425 at 926.282 kb on + strand, within HMPREF1058_RS15425 at 926.322 kb on - strand, within HMPREF1058_RS15425 at 926.371 kb on + strand, within HMPREF1058_RS15425 at 926.389 kb on + strand, within HMPREF1058_RS15425 at 926.423 kb on - strand, within HMPREF1058_RS15425 at 926.434 kb on + strand, within HMPREF1058_RS15425 at 926.434 kb on + strand, within HMPREF1058_RS15425 at 926.434 kb on + strand, within HMPREF1058_RS15425 at 926.434 kb on + strand, within HMPREF1058_RS15425 at 926.436 kb on + strand, within HMPREF1058_RS15425
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse18; day2 remove 922,813 + +1.2 922,834 + +0.7 922,834 + +1.3 922,835 - +0.7 922,844 + +1.9 922,845 - +0.6 922,874 + +1.2 922,876 + -2.8 922,877 - +0.5 922,877 - +0.2 922,881 + +0.0 922,881 + +0.1 922,973 + HMPREF1058_RS15435 0.14 -0.6 922,974 - HMPREF1058_RS15435 0.14 -0.3 922,974 - HMPREF1058_RS15435 0.14 +0.8 922,975 + HMPREF1058_RS15435 0.14 -0.1 922,976 - HMPREF1058_RS15435 0.14 +0.4 922,998 - HMPREF1058_RS15435 0.17 -1.5 922,998 - HMPREF1058_RS15435 0.17 -0.1 922,998 - HMPREF1058_RS15435 0.17 -0.3 923,019 + HMPREF1058_RS15435 0.19 -0.1 923,099 - HMPREF1058_RS15435 0.29 +0.5 923,144 - HMPREF1058_RS15435 0.35 -0.1 923,148 - HMPREF1058_RS15435 0.35 -0.6 923,152 + HMPREF1058_RS15435 0.36 -0.4 923,157 - HMPREF1058_RS15435 0.36 +0.2 923,174 + HMPREF1058_RS15435 0.38 -0.7 923,174 + HMPREF1058_RS15435 0.38 -0.6 923,175 - HMPREF1058_RS15435 0.38 -0.0 923,247 + HMPREF1058_RS15435 0.47 -0.7 923,436 - HMPREF1058_RS15435 0.70 +0.6 923,436 - HMPREF1058_RS15435 0.70 -0.1 923,473 - HMPREF1058_RS15435 0.75 +0.3 923,489 - HMPREF1058_RS15435 0.77 +0.2 923,594 - HMPREF1058_RS15435 0.89 +0.7 923,644 - +0.8 923,691 - +0.1 923,691 - -0.7 923,691 - -0.0 923,791 - +0.0 923,791 - -0.4 923,820 + +1.2 923,821 - -1.0 923,937 + +1.2 923,940 + +1.5 923,968 + +1.6 923,969 - -2.3 923,969 - -0.4 924,105 + HMPREF1058_RS15430 0.18 +1.3 924,105 + HMPREF1058_RS15430 0.18 +1.3 924,105 + HMPREF1058_RS15430 0.18 +1.6 924,106 - HMPREF1058_RS15430 0.18 -0.1 924,106 - HMPREF1058_RS15430 0.18 -0.6 924,132 + HMPREF1058_RS15430 0.19 +1.4 924,207 + HMPREF1058_RS15430 0.24 +1.6 924,207 + HMPREF1058_RS15430 0.24 +0.8 924,223 + HMPREF1058_RS15430 0.24 +1.3 924,223 + HMPREF1058_RS15430 0.24 +0.8 924,244 - HMPREF1058_RS15430 0.26 +0.6 924,266 - HMPREF1058_RS15430 0.27 -1.3 924,298 - HMPREF1058_RS15430 0.29 -0.4 924,789 + HMPREF1058_RS15430 0.58 +0.4 924,890 - HMPREF1058_RS15430 0.64 +1.4 924,890 - HMPREF1058_RS15430 0.64 +0.7 924,943 - HMPREF1058_RS15430 0.67 +1.5 924,947 + HMPREF1058_RS15430 0.67 -0.1 924,951 + HMPREF1058_RS15430 0.67 +1.2 924,951 + HMPREF1058_RS15430 0.67 +1.0 924,951 + HMPREF1058_RS15430 0.67 +0.5 924,981 + HMPREF1058_RS15430 0.69 +0.8 925,012 + HMPREF1058_RS15430 0.71 +1.1 925,052 - HMPREF1058_RS15430 0.73 +0.6 925,095 + HMPREF1058_RS15430 0.76 +0.1 925,095 + HMPREF1058_RS15430 0.76 +0.2 925,096 - HMPREF1058_RS15430 0.76 +0.8 925,166 - HMPREF1058_RS15430 0.80 +0.5 925,170 + HMPREF1058_RS15430 0.80 +0.4 925,171 - HMPREF1058_RS15430 0.80 +1.4 925,224 + HMPREF1058_RS15430 0.83 +0.7 925,242 + HMPREF1058_RS15430 0.84 +0.6 925,249 + HMPREF1058_RS15430 0.85 +0.0 925,249 + HMPREF1058_RS15430 0.85 +0.3 925,250 - HMPREF1058_RS15430 0.85 +0.4 925,250 - HMPREF1058_RS15430 0.85 +0.6 925,250 - HMPREF1058_RS15430 0.85 +0.6 925,250 - HMPREF1058_RS15430 0.85 -0.4 925,264 - HMPREF1058_RS15430 0.86 +0.9 925,294 - HMPREF1058_RS15430 0.87 +0.9 925,316 + HMPREF1058_RS15430 0.89 +0.9 925,316 + HMPREF1058_RS15430 0.89 +0.2 925,317 - HMPREF1058_RS15430 0.89 +0.6 925,317 - HMPREF1058_RS15430 0.89 +0.6 925,320 + HMPREF1058_RS15430 0.89 -0.1 925,320 + HMPREF1058_RS15430 0.89 +0.4 925,320 + HMPREF1058_RS15430 0.89 +1.0 925,320 + HMPREF1058_RS15430 0.89 -0.3 925,395 + -0.3 925,433 + +0.5 925,460 - +0.1 925,460 - +0.4 925,474 - +1.1 925,492 - +0.6 925,522 - +0.8 925,538 - +0.8 925,676 + -0.0 925,677 - +0.4 925,872 - HMPREF1058_RS15425 0.21 +1.1 925,875 + HMPREF1058_RS15425 0.21 +0.1 925,878 - HMPREF1058_RS15425 0.21 -0.8 925,946 - HMPREF1058_RS15425 0.26 +0.5 925,961 + HMPREF1058_RS15425 0.26 +0.5 925,962 - HMPREF1058_RS15425 0.27 -0.8 926,094 + HMPREF1058_RS15425 0.35 +1.1 926,095 - HMPREF1058_RS15425 0.35 -0.2 926,098 + HMPREF1058_RS15425 0.35 +0.3 926,098 + HMPREF1058_RS15425 0.35 +0.6 926,146 + HMPREF1058_RS15425 0.38 +0.3 926,162 + HMPREF1058_RS15425 0.39 +0.6 926,162 + HMPREF1058_RS15425 0.39 +1.2 926,175 + HMPREF1058_RS15425 0.39 -0.4 926,175 + HMPREF1058_RS15425 0.39 +0.1 926,175 + HMPREF1058_RS15425 0.39 +0.3 926,176 - HMPREF1058_RS15425 0.40 +0.1 926,176 - HMPREF1058_RS15425 0.40 +0.0 926,179 + HMPREF1058_RS15425 0.40 +0.6 926,180 - HMPREF1058_RS15425 0.40 -0.3 926,180 - HMPREF1058_RS15425 0.40 +0.3 926,259 - HMPREF1058_RS15425 0.45 -0.2 926,268 + HMPREF1058_RS15425 0.45 +0.4 926,269 - HMPREF1058_RS15425 0.45 -0.1 926,282 + HMPREF1058_RS15425 0.46 -0.7 926,322 - HMPREF1058_RS15425 0.48 +0.8 926,371 + HMPREF1058_RS15425 0.51 +0.5 926,389 + HMPREF1058_RS15425 0.53 +0.2 926,423 - HMPREF1058_RS15425 0.55 -0.1 926,434 + HMPREF1058_RS15425 0.55 -0.7 926,434 + HMPREF1058_RS15425 0.55 +0.6 926,434 + HMPREF1058_RS15425 0.55 -0.1 926,434 + HMPREF1058_RS15425 0.55 +0.5 926,436 + HMPREF1058_RS15425 0.55 -0.0
Or see this region's nucleotide sequence