Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse18; day2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS11280 and HMPREF1058_RS11275 are separated by 337 nucleotides HMPREF1058_RS11275 and HMPREF1058_RS11270 are separated by 37 nucleotides
HMPREF1058_RS11280: HMPREF1058_RS11280 - tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB, at 409,043 to 410,413
_RS11280
HMPREF1058_RS11275: HMPREF1058_RS11275 - hypothetical protein, at 410,751 to 411,101
_RS11275
HMPREF1058_RS11270: HMPREF1058_RS11270 - acetyl-CoA hydrolase/transferase family protein, at 411,139 to 412,632
_RS11270
Position (kb) 410
411
412 Strain fitness (log2 ratio) -1
0
1
2 at 409.782 kb on - strand, within HMPREF1058_RS11280 at 409.789 kb on + strand, within HMPREF1058_RS11280 at 409.790 kb on - strand, within HMPREF1058_RS11280 at 409.828 kb on + strand, within HMPREF1058_RS11280 at 409.867 kb on - strand, within HMPREF1058_RS11280 at 409.959 kb on - strand, within HMPREF1058_RS11280 at 409.996 kb on + strand, within HMPREF1058_RS11280 at 410.049 kb on + strand, within HMPREF1058_RS11280 at 410.049 kb on + strand, within HMPREF1058_RS11280 at 410.063 kb on + strand, within HMPREF1058_RS11280 at 410.106 kb on - strand, within HMPREF1058_RS11280 at 410.167 kb on + strand, within HMPREF1058_RS11280 at 410.167 kb on + strand, within HMPREF1058_RS11280 at 410.167 kb on + strand, within HMPREF1058_RS11280 at 410.168 kb on - strand, within HMPREF1058_RS11280 at 410.241 kb on - strand, within HMPREF1058_RS11280 at 410.270 kb on + strand, within HMPREF1058_RS11280 at 410.270 kb on + strand, within HMPREF1058_RS11280 at 410.270 kb on + strand, within HMPREF1058_RS11280 at 410.414 kb on - strand at 410.427 kb on + strand at 410.571 kb on + strand at 410.574 kb on + strand at 410.574 kb on + strand at 410.579 kb on + strand at 410.588 kb on + strand at 410.690 kb on + strand at 410.690 kb on + strand at 410.691 kb on - strand at 410.734 kb on + strand at 410.735 kb on - strand at 410.735 kb on - strand at 410.779 kb on + strand at 410.782 kb on + strand at 410.867 kb on + strand, within HMPREF1058_RS11275 at 410.868 kb on - strand, within HMPREF1058_RS11275 at 410.882 kb on - strand, within HMPREF1058_RS11275 at 410.896 kb on + strand, within HMPREF1058_RS11275 at 410.896 kb on + strand, within HMPREF1058_RS11275 at 411.030 kb on - strand, within HMPREF1058_RS11275 at 411.031 kb on + strand, within HMPREF1058_RS11275 at 411.031 kb on + strand, within HMPREF1058_RS11275 at 411.114 kb on + strand at 411.115 kb on - strand at 411.118 kb on - strand at 411.136 kb on - strand at 411.148 kb on - strand at 411.193 kb on + strand at 411.304 kb on - strand, within HMPREF1058_RS11270 at 411.306 kb on + strand, within HMPREF1058_RS11270 at 411.306 kb on + strand, within HMPREF1058_RS11270 at 411.306 kb on + strand, within HMPREF1058_RS11270 at 411.325 kb on - strand, within HMPREF1058_RS11270 at 411.337 kb on - strand, within HMPREF1058_RS11270 at 411.351 kb on - strand, within HMPREF1058_RS11270 at 411.436 kb on + strand, within HMPREF1058_RS11270 at 411.437 kb on - strand, within HMPREF1058_RS11270 at 411.474 kb on - strand, within HMPREF1058_RS11270 at 411.580 kb on - strand, within HMPREF1058_RS11270 at 411.734 kb on + strand, within HMPREF1058_RS11270 at 411.740 kb on + strand, within HMPREF1058_RS11270 at 411.741 kb on - strand, within HMPREF1058_RS11270 at 411.879 kb on + strand, within HMPREF1058_RS11270 at 411.880 kb on - strand, within HMPREF1058_RS11270 at 411.880 kb on - strand, within HMPREF1058_RS11270 at 411.982 kb on + strand, within HMPREF1058_RS11270 at 411.983 kb on - strand, within HMPREF1058_RS11270 at 412.047 kb on + strand, within HMPREF1058_RS11270 at 412.048 kb on - strand, within HMPREF1058_RS11270 at 412.048 kb on - strand, within HMPREF1058_RS11270 at 412.091 kb on - strand, within HMPREF1058_RS11270
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse18; day2 remove 409,782 - HMPREF1058_RS11280 0.54 +0.7 409,789 + HMPREF1058_RS11280 0.54 -0.1 409,790 - HMPREF1058_RS11280 0.54 -1.1 409,828 + HMPREF1058_RS11280 0.57 -0.8 409,867 - HMPREF1058_RS11280 0.60 -1.7 409,959 - HMPREF1058_RS11280 0.67 -0.1 409,996 + HMPREF1058_RS11280 0.70 -0.8 410,049 + HMPREF1058_RS11280 0.73 -0.1 410,049 + HMPREF1058_RS11280 0.73 -0.9 410,063 + HMPREF1058_RS11280 0.74 -1.3 410,106 - HMPREF1058_RS11280 0.78 -0.3 410,167 + HMPREF1058_RS11280 0.82 +0.1 410,167 + HMPREF1058_RS11280 0.82 -0.8 410,167 + HMPREF1058_RS11280 0.82 -1.3 410,168 - HMPREF1058_RS11280 0.82 -0.2 410,241 - HMPREF1058_RS11280 0.87 -0.9 410,270 + HMPREF1058_RS11280 0.89 -0.6 410,270 + HMPREF1058_RS11280 0.89 -0.9 410,270 + HMPREF1058_RS11280 0.89 -0.5 410,414 - -0.3 410,427 + -1.1 410,571 + -0.1 410,574 + +0.3 410,574 + +0.0 410,579 + -1.0 410,588 + -0.3 410,690 + -0.8 410,690 + +0.0 410,691 - +0.9 410,734 + -0.3 410,735 - -0.7 410,735 - +1.6 410,779 + -0.5 410,782 + -0.6 410,867 + HMPREF1058_RS11275 0.33 +0.3 410,868 - HMPREF1058_RS11275 0.33 +1.0 410,882 - HMPREF1058_RS11275 0.37 +0.6 410,896 + HMPREF1058_RS11275 0.41 +0.9 410,896 + HMPREF1058_RS11275 0.41 -0.3 411,030 - HMPREF1058_RS11275 0.79 +1.1 411,031 + HMPREF1058_RS11275 0.80 -0.1 411,031 + HMPREF1058_RS11275 0.80 -0.1 411,114 + -0.5 411,115 - +2.7 411,118 - +0.4 411,136 - +0.5 411,148 - +0.9 411,193 + +0.6 411,304 - HMPREF1058_RS11270 0.11 +0.4 411,306 + HMPREF1058_RS11270 0.11 +0.9 411,306 + HMPREF1058_RS11270 0.11 +1.1 411,306 + HMPREF1058_RS11270 0.11 -0.2 411,325 - HMPREF1058_RS11270 0.12 +0.2 411,337 - HMPREF1058_RS11270 0.13 +0.2 411,351 - HMPREF1058_RS11270 0.14 +0.2 411,436 + HMPREF1058_RS11270 0.20 +0.6 411,437 - HMPREF1058_RS11270 0.20 +0.6 411,474 - HMPREF1058_RS11270 0.22 +0.9 411,580 - HMPREF1058_RS11270 0.30 -0.4 411,734 + HMPREF1058_RS11270 0.40 +0.8 411,740 + HMPREF1058_RS11270 0.40 +0.7 411,741 - HMPREF1058_RS11270 0.40 +0.4 411,879 + HMPREF1058_RS11270 0.50 +0.9 411,880 - HMPREF1058_RS11270 0.50 +0.6 411,880 - HMPREF1058_RS11270 0.50 +2.1 411,982 + HMPREF1058_RS11270 0.56 +0.9 411,983 - HMPREF1058_RS11270 0.56 +0.6 412,047 + HMPREF1058_RS11270 0.61 +1.1 412,048 - HMPREF1058_RS11270 0.61 +2.1 412,048 - HMPREF1058_RS11270 0.61 +0.3 412,091 - HMPREF1058_RS11270 0.64 +0.5
Or see this region's nucleotide sequence