Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS10975

Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse18; day2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS10985 and HMPREF1058_RS10980 are separated by 511 nucleotidesHMPREF1058_RS10980 and HMPREF1058_RS10975 are separated by 150 nucleotidesHMPREF1058_RS10975 and HMPREF1058_RS10970 are separated by 300 nucleotides HMPREF1058_RS10985: HMPREF1058_RS10985 - RNA methyltransferase, at 509,614 to 511,062 _RS10985 HMPREF1058_RS10980: HMPREF1058_RS10980 - hypothetical protein, at 511,574 to 511,765 _RS10980 HMPREF1058_RS10975: HMPREF1058_RS10975 - serine acetyltransferase, at 511,916 to 512,824 _RS10975 HMPREF1058_RS10970: HMPREF1058_RS10970 - ribonuclease R, at 513,125 to 515,272 _RS10970 Position (kb) 511 512 513Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 510.920 kb on + strandat 510.920 kb on + strandat 510.920 kb on + strandat 510.921 kb on - strandat 510.921 kb on - strandat 510.970 kb on + strandat 510.971 kb on - strandat 511.072 kb on + strandat 511.253 kb on - strandat 511.276 kb on + strandat 511.277 kb on - strandat 511.277 kb on - strandat 511.305 kb on - strandat 511.307 kb on - strandat 511.319 kb on + strandat 511.409 kb on - strandat 511.409 kb on - strandat 511.409 kb on - strandat 511.409 kb on - strandat 511.448 kb on - strandat 511.457 kb on - strandat 511.510 kb on + strandat 511.511 kb on - strandat 511.511 kb on - strandat 511.713 kb on + strand, within HMPREF1058_RS10980at 511.736 kb on + strand, within HMPREF1058_RS10980at 511.737 kb on - strand, within HMPREF1058_RS10980at 511.756 kb on + strandat 511.756 kb on + strandat 511.765 kb on + strandat 511.765 kb on + strandat 511.766 kb on - strandat 511.767 kb on + strandat 511.767 kb on + strandat 511.767 kb on + strandat 511.767 kb on + strandat 511.768 kb on - strandat 511.768 kb on - strandat 511.770 kb on - strandat 511.787 kb on - strandat 511.804 kb on + strandat 511.804 kb on + strandat 511.899 kb on - strandat 511.940 kb on + strandat 511.961 kb on + strandat 511.961 kb on + strandat 512.045 kb on + strand, within HMPREF1058_RS10975at 512.045 kb on + strand, within HMPREF1058_RS10975at 512.045 kb on + strand, within HMPREF1058_RS10975at 512.045 kb on + strand, within HMPREF1058_RS10975at 512.045 kb on + strand, within HMPREF1058_RS10975at 512.045 kb on + strand, within HMPREF1058_RS10975at 512.064 kb on - strand, within HMPREF1058_RS10975at 512.069 kb on - strand, within HMPREF1058_RS10975at 512.069 kb on - strand, within HMPREF1058_RS10975at 512.192 kb on + strand, within HMPREF1058_RS10975at 512.228 kb on + strand, within HMPREF1058_RS10975at 512.412 kb on + strand, within HMPREF1058_RS10975at 512.413 kb on - strand, within HMPREF1058_RS10975at 512.423 kb on + strand, within HMPREF1058_RS10975at 512.597 kb on + strand, within HMPREF1058_RS10975at 512.616 kb on + strand, within HMPREF1058_RS10975at 512.616 kb on + strand, within HMPREF1058_RS10975at 512.688 kb on - strand, within HMPREF1058_RS10975at 513.070 kb on + strandat 513.071 kb on - strandat 513.243 kb on + strandat 513.268 kb on - strandat 513.331 kb on - strandat 513.331 kb on - strandat 513.464 kb on - strand, within HMPREF1058_RS10970at 513.575 kb on - strand, within HMPREF1058_RS10970at 513.586 kb on - strand, within HMPREF1058_RS10970at 513.589 kb on - strand, within HMPREF1058_RS10970at 513.619 kb on + strand, within HMPREF1058_RS10970at 513.619 kb on + strand, within HMPREF1058_RS10970at 513.620 kb on - strand, within HMPREF1058_RS10970at 513.695 kb on + strand, within HMPREF1058_RS10970at 513.696 kb on - strand, within HMPREF1058_RS10970at 513.751 kb on + strand, within HMPREF1058_RS10970at 513.751 kb on + strand, within HMPREF1058_RS10970at 513.752 kb on - strand, within HMPREF1058_RS10970at 513.752 kb on - strand, within HMPREF1058_RS10970at 513.752 kb on - strand, within HMPREF1058_RS10970at 513.755 kb on + strand, within HMPREF1058_RS10970at 513.755 kb on + strand, within HMPREF1058_RS10970at 513.756 kb on - strand, within HMPREF1058_RS10970at 513.761 kb on - strand, within HMPREF1058_RS10970at 513.761 kb on - strand, within HMPREF1058_RS10970

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Per-strain Table

Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse18; day2
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510,920 + -3.6
510,920 + -5.0
510,920 + -4.3
510,921 - -0.5
510,921 - -0.9
510,970 + -4.7
510,971 - +0.7
511,072 + -2.8
511,253 - -0.6
511,276 + +0.1
511,277 - +0.3
511,277 - -0.2
511,305 - +0.3
511,307 - +0.1
511,319 + +0.1
511,409 - -0.0
511,409 - -0.4
511,409 - -0.7
511,409 - -0.3
511,448 - +0.1
511,457 - +0.1
511,510 + +0.3
511,511 - -0.4
511,511 - +0.6
511,713 + HMPREF1058_RS10980 0.72 +0.2
511,736 + HMPREF1058_RS10980 0.84 -0.0
511,737 - HMPREF1058_RS10980 0.85 -1.3
511,756 + +0.5
511,756 + +0.2
511,765 + +0.2
511,765 + -0.4
511,766 - +0.4
511,767 + +0.6
511,767 + -0.8
511,767 + -0.3
511,767 + -0.1
511,768 - +1.0
511,768 - -1.1
511,770 - +0.4
511,787 - -0.5
511,804 + +0.2
511,804 + -0.1
511,899 - +0.1
511,940 + +0.1
511,961 + +0.7
511,961 + -0.0
512,045 + HMPREF1058_RS10975 0.14 +0.6
512,045 + HMPREF1058_RS10975 0.14 +0.4
512,045 + HMPREF1058_RS10975 0.14 -0.3
512,045 + HMPREF1058_RS10975 0.14 +0.5
512,045 + HMPREF1058_RS10975 0.14 +0.3
512,045 + HMPREF1058_RS10975 0.14 +0.8
512,064 - HMPREF1058_RS10975 0.16 +0.2
512,069 - HMPREF1058_RS10975 0.17 +0.7
512,069 - HMPREF1058_RS10975 0.17 +1.3
512,192 + HMPREF1058_RS10975 0.30 +0.6
512,228 + HMPREF1058_RS10975 0.34 -0.8
512,412 + HMPREF1058_RS10975 0.55 -0.3
512,413 - HMPREF1058_RS10975 0.55 +0.6
512,423 + HMPREF1058_RS10975 0.56 -0.3
512,597 + HMPREF1058_RS10975 0.75 -0.0
512,616 + HMPREF1058_RS10975 0.77 +0.3
512,616 + HMPREF1058_RS10975 0.77 +0.3
512,688 - HMPREF1058_RS10975 0.85 -0.3
513,070 + +0.6
513,071 - +0.1
513,243 + +1.3
513,268 - -0.8
513,331 - -2.0
513,331 - -0.4
513,464 - HMPREF1058_RS10970 0.16 -2.0
513,575 - HMPREF1058_RS10970 0.21 -0.9
513,586 - HMPREF1058_RS10970 0.21 -0.3
513,589 - HMPREF1058_RS10970 0.22 -0.0
513,619 + HMPREF1058_RS10970 0.23 -1.3
513,619 + HMPREF1058_RS10970 0.23 -1.1
513,620 - HMPREF1058_RS10970 0.23 -1.2
513,695 + HMPREF1058_RS10970 0.27 -1.3
513,696 - HMPREF1058_RS10970 0.27 -1.2
513,751 + HMPREF1058_RS10970 0.29 -2.1
513,751 + HMPREF1058_RS10970 0.29 -0.3
513,752 - HMPREF1058_RS10970 0.29 -0.6
513,752 - HMPREF1058_RS10970 0.29 +0.7
513,752 - HMPREF1058_RS10970 0.29 -0.9
513,755 + HMPREF1058_RS10970 0.29 -0.9
513,755 + HMPREF1058_RS10970 0.29 -0.6
513,756 - HMPREF1058_RS10970 0.29 -0.2
513,761 - HMPREF1058_RS10970 0.30 +0.2
513,761 - HMPREF1058_RS10970 0.30 -0.2

Or see this region's nucleotide sequence