Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse18; day2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS03940 and HMPREF1058_RS03935 are separated by 61 nucleotides HMPREF1058_RS03935 and HMPREF1058_RS03930 are separated by 58 nucleotides HMPREF1058_RS03930 and HMPREF1058_RS03925 are separated by 8 nucleotides
HMPREF1058_RS03940: HMPREF1058_RS03940 - Nif3-like dinuclear metal center hexameric protein, at 154,119 to 155,213
_RS03940
HMPREF1058_RS03935: HMPREF1058_RS03935 - hypothetical protein, at 155,275 to 155,553
_RS03935
HMPREF1058_RS03930: HMPREF1058_RS03930 - ABC transporter permease, at 155,612 to 156,409
_RS03930
HMPREF1058_RS03925: HMPREF1058_RS03925 - ATP-binding cassette domain-containing protein, at 156,418 to 157,038
_RS03925
Position (kb) 155
156 Strain fitness (log2 ratio) -1
0
1 at 154.286 kb on - strand, within HMPREF1058_RS03940 at 154.309 kb on - strand, within HMPREF1058_RS03940 at 154.404 kb on - strand, within HMPREF1058_RS03940 at 154.618 kb on - strand, within HMPREF1058_RS03940 at 154.730 kb on - strand, within HMPREF1058_RS03940 at 154.730 kb on - strand, within HMPREF1058_RS03940 at 154.730 kb on - strand, within HMPREF1058_RS03940 at 154.734 kb on - strand, within HMPREF1058_RS03940 at 154.738 kb on - strand, within HMPREF1058_RS03940 at 154.843 kb on - strand, within HMPREF1058_RS03940 at 154.849 kb on - strand, within HMPREF1058_RS03940 at 154.998 kb on - strand, within HMPREF1058_RS03940 at 155.011 kb on - strand, within HMPREF1058_RS03940 at 155.042 kb on - strand, within HMPREF1058_RS03940 at 155.277 kb on - strand at 155.285 kb on + strand at 155.307 kb on + strand, within HMPREF1058_RS03935 at 155.419 kb on + strand, within HMPREF1058_RS03935 at 155.443 kb on - strand, within HMPREF1058_RS03935 at 155.452 kb on - strand, within HMPREF1058_RS03935 at 155.454 kb on + strand, within HMPREF1058_RS03935 at 155.455 kb on - strand, within HMPREF1058_RS03935 at 155.480 kb on + strand, within HMPREF1058_RS03935 at 155.485 kb on + strand, within HMPREF1058_RS03935 at 155.486 kb on - strand, within HMPREF1058_RS03935 at 155.486 kb on - strand, within HMPREF1058_RS03935 at 155.488 kb on - strand, within HMPREF1058_RS03935 at 155.529 kb on + strand at 155.531 kb on + strand at 155.532 kb on - strand at 155.561 kb on + strand at 155.578 kb on + strand at 155.583 kb on - strand at 155.613 kb on + strand at 155.729 kb on - strand, within HMPREF1058_RS03930 at 155.798 kb on - strand, within HMPREF1058_RS03930 at 155.965 kb on - strand, within HMPREF1058_RS03930 at 155.965 kb on - strand, within HMPREF1058_RS03930 at 155.973 kb on - strand, within HMPREF1058_RS03930 at 155.998 kb on + strand, within HMPREF1058_RS03930 at 156.013 kb on + strand, within HMPREF1058_RS03930 at 156.252 kb on + strand, within HMPREF1058_RS03930 at 156.277 kb on + strand, within HMPREF1058_RS03930 at 156.278 kb on - strand, within HMPREF1058_RS03930 at 156.284 kb on - strand, within HMPREF1058_RS03930 at 156.284 kb on - strand, within HMPREF1058_RS03930 at 156.352 kb on + strand at 156.393 kb on - strand at 156.427 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse18; day2 remove 154,286 - HMPREF1058_RS03940 0.15 -0.9 154,309 - HMPREF1058_RS03940 0.17 -0.1 154,404 - HMPREF1058_RS03940 0.26 -0.4 154,618 - HMPREF1058_RS03940 0.46 +0.5 154,730 - HMPREF1058_RS03940 0.56 +1.0 154,730 - HMPREF1058_RS03940 0.56 +0.6 154,730 - HMPREF1058_RS03940 0.56 +0.3 154,734 - HMPREF1058_RS03940 0.56 -0.1 154,738 - HMPREF1058_RS03940 0.57 +0.0 154,843 - HMPREF1058_RS03940 0.66 +0.2 154,849 - HMPREF1058_RS03940 0.67 +1.1 154,998 - HMPREF1058_RS03940 0.80 -1.4 155,011 - HMPREF1058_RS03940 0.81 -0.1 155,042 - HMPREF1058_RS03940 0.84 -0.6 155,277 - +0.6 155,285 + +1.2 155,307 + HMPREF1058_RS03935 0.11 -0.0 155,419 + HMPREF1058_RS03935 0.52 +0.3 155,443 - HMPREF1058_RS03935 0.60 +1.1 155,452 - HMPREF1058_RS03935 0.63 +0.5 155,454 + HMPREF1058_RS03935 0.64 -0.8 155,455 - HMPREF1058_RS03935 0.65 -0.1 155,480 + HMPREF1058_RS03935 0.73 -0.1 155,485 + HMPREF1058_RS03935 0.75 +0.1 155,486 - HMPREF1058_RS03935 0.76 +0.4 155,486 - HMPREF1058_RS03935 0.76 +1.0 155,488 - HMPREF1058_RS03935 0.76 +1.0 155,529 + +0.2 155,531 + +0.2 155,532 - +0.1 155,561 + -1.0 155,578 + +0.1 155,583 - +0.3 155,613 + -0.4 155,729 - HMPREF1058_RS03930 0.15 +0.8 155,798 - HMPREF1058_RS03930 0.23 +0.7 155,965 - HMPREF1058_RS03930 0.44 +0.4 155,965 - HMPREF1058_RS03930 0.44 +0.6 155,973 - HMPREF1058_RS03930 0.45 -0.1 155,998 + HMPREF1058_RS03930 0.48 -0.4 156,013 + HMPREF1058_RS03930 0.50 -0.2 156,252 + HMPREF1058_RS03930 0.80 -0.2 156,277 + HMPREF1058_RS03930 0.83 +0.5 156,278 - HMPREF1058_RS03930 0.83 +0.2 156,284 - HMPREF1058_RS03930 0.84 +0.4 156,284 - HMPREF1058_RS03930 0.84 +1.0 156,352 + -1.2 156,393 - -0.0 156,427 - +1.1
Or see this region's nucleotide sequence