Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse18; day2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS03280 and HMPREF1058_RS03275 are separated by 21 nucleotides HMPREF1058_RS03275 and HMPREF1058_RS03270 overlap by 1 nucleotides HMPREF1058_RS03270 and HMPREF1058_RS03265 are separated by 85 nucleotides
HMPREF1058_RS03280: HMPREF1058_RS03280 - phosphomethylpyrimidine synthase ThiC, at 315,240 to 316,940
_RS03280
HMPREF1058_RS03275: HMPREF1058_RS03275 - hypothetical protein, at 316,962 to 317,477
_RS03275
HMPREF1058_RS03270: HMPREF1058_RS03270 - flavodoxin family protein, at 317,477 to 318,049
_RS03270
HMPREF1058_RS03265: HMPREF1058_RS03265 - 2-iminoacetate synthase ThiH, at 318,135 to 319,265
_RS03265
Position (kb) 316
317
318 Strain fitness (log2 ratio) -1
0
1 at 316.020 kb on - strand, within HMPREF1058_RS03280 at 316.028 kb on + strand, within HMPREF1058_RS03280 at 316.029 kb on - strand, within HMPREF1058_RS03280 at 316.032 kb on + strand, within HMPREF1058_RS03280 at 316.087 kb on - strand, within HMPREF1058_RS03280 at 316.095 kb on - strand, within HMPREF1058_RS03280 at 316.129 kb on - strand, within HMPREF1058_RS03280 at 316.237 kb on + strand, within HMPREF1058_RS03280 at 316.258 kb on + strand, within HMPREF1058_RS03280 at 316.258 kb on + strand, within HMPREF1058_RS03280 at 316.260 kb on + strand, within HMPREF1058_RS03280 at 316.299 kb on + strand, within HMPREF1058_RS03280 at 316.299 kb on + strand, within HMPREF1058_RS03280 at 316.306 kb on + strand, within HMPREF1058_RS03280 at 316.403 kb on - strand, within HMPREF1058_RS03280 at 316.456 kb on + strand, within HMPREF1058_RS03280 at 316.457 kb on - strand, within HMPREF1058_RS03280 at 316.457 kb on - strand, within HMPREF1058_RS03280 at 316.467 kb on - strand, within HMPREF1058_RS03280 at 316.626 kb on + strand, within HMPREF1058_RS03280 at 316.626 kb on + strand, within HMPREF1058_RS03280 at 316.627 kb on - strand, within HMPREF1058_RS03280 at 316.627 kb on - strand, within HMPREF1058_RS03280 at 316.672 kb on + strand, within HMPREF1058_RS03280 at 316.673 kb on - strand, within HMPREF1058_RS03280 at 316.673 kb on - strand, within HMPREF1058_RS03280 at 316.673 kb on - strand, within HMPREF1058_RS03280 at 316.673 kb on - strand, within HMPREF1058_RS03280 at 316.679 kb on - strand, within HMPREF1058_RS03280 at 316.762 kb on + strand, within HMPREF1058_RS03280 at 316.870 kb on - strand at 317.011 kb on + strand at 317.012 kb on - strand at 317.020 kb on + strand, within HMPREF1058_RS03275 at 317.021 kb on - strand, within HMPREF1058_RS03275 at 317.350 kb on - strand, within HMPREF1058_RS03275 at 317.421 kb on + strand, within HMPREF1058_RS03275 at 317.425 kb on - strand, within HMPREF1058_RS03275 at 317.476 kb on - strand at 317.484 kb on + strand at 317.601 kb on - strand, within HMPREF1058_RS03270 at 317.694 kb on + strand, within HMPREF1058_RS03270 at 317.764 kb on - strand, within HMPREF1058_RS03270 at 317.884 kb on + strand, within HMPREF1058_RS03270 at 317.914 kb on - strand, within HMPREF1058_RS03270 at 318.033 kb on + strand at 318.084 kb on + strand at 318.094 kb on + strand at 318.095 kb on - strand at 318.367 kb on - strand, within HMPREF1058_RS03265 at 318.367 kb on - strand, within HMPREF1058_RS03265 at 318.368 kb on + strand, within HMPREF1058_RS03265 at 318.399 kb on + strand, within HMPREF1058_RS03265 at 318.434 kb on + strand, within HMPREF1058_RS03265 at 318.469 kb on - strand, within HMPREF1058_RS03265
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse18; day2 remove 316,020 - HMPREF1058_RS03280 0.46 -1.6 316,028 + HMPREF1058_RS03280 0.46 -0.2 316,029 - HMPREF1058_RS03280 0.46 -0.3 316,032 + HMPREF1058_RS03280 0.47 -0.3 316,087 - HMPREF1058_RS03280 0.50 +1.4 316,095 - HMPREF1058_RS03280 0.50 +0.2 316,129 - HMPREF1058_RS03280 0.52 +0.2 316,237 + HMPREF1058_RS03280 0.59 +0.5 316,258 + HMPREF1058_RS03280 0.60 -0.7 316,258 + HMPREF1058_RS03280 0.60 -0.0 316,260 + HMPREF1058_RS03280 0.60 -0.2 316,299 + HMPREF1058_RS03280 0.62 -0.1 316,299 + HMPREF1058_RS03280 0.62 +1.0 316,306 + HMPREF1058_RS03280 0.63 +0.3 316,403 - HMPREF1058_RS03280 0.68 +0.3 316,456 + HMPREF1058_RS03280 0.71 +0.1 316,457 - HMPREF1058_RS03280 0.72 +0.1 316,457 - HMPREF1058_RS03280 0.72 +0.5 316,467 - HMPREF1058_RS03280 0.72 +0.2 316,626 + HMPREF1058_RS03280 0.81 +0.0 316,626 + HMPREF1058_RS03280 0.81 +0.7 316,627 - HMPREF1058_RS03280 0.82 +0.5 316,627 - HMPREF1058_RS03280 0.82 +0.2 316,672 + HMPREF1058_RS03280 0.84 +0.3 316,673 - HMPREF1058_RS03280 0.84 -0.0 316,673 - HMPREF1058_RS03280 0.84 +0.0 316,673 - HMPREF1058_RS03280 0.84 +0.3 316,673 - HMPREF1058_RS03280 0.84 +0.7 316,679 - HMPREF1058_RS03280 0.85 +0.7 316,762 + HMPREF1058_RS03280 0.89 +1.4 316,870 - +0.9 317,011 + +0.4 317,012 - -0.1 317,020 + HMPREF1058_RS03275 0.11 +0.1 317,021 - HMPREF1058_RS03275 0.11 +1.5 317,350 - HMPREF1058_RS03275 0.75 +0.3 317,421 + HMPREF1058_RS03275 0.89 +0.2 317,425 - HMPREF1058_RS03275 0.90 +1.5 317,476 - -0.0 317,484 + +0.6 317,601 - HMPREF1058_RS03270 0.22 -1.7 317,694 + HMPREF1058_RS03270 0.38 -0.1 317,764 - HMPREF1058_RS03270 0.50 -0.3 317,884 + HMPREF1058_RS03270 0.71 -0.4 317,914 - HMPREF1058_RS03270 0.76 -0.2 318,033 + -0.4 318,084 + +0.3 318,094 + +0.3 318,095 - -0.6 318,367 - HMPREF1058_RS03265 0.21 +0.2 318,367 - HMPREF1058_RS03265 0.21 +0.1 318,368 + HMPREF1058_RS03265 0.21 -0.1 318,399 + HMPREF1058_RS03265 0.23 +0.2 318,434 + HMPREF1058_RS03265 0.26 -0.8 318,469 - HMPREF1058_RS03265 0.30 +0.4
Or see this region's nucleotide sequence