Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse18; day2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS03080 and HMPREF1058_RS03075 are separated by 157 nucleotides HMPREF1058_RS03075 and HMPREF1058_RS03070 are separated by 138 nucleotides
HMPREF1058_RS03080: HMPREF1058_RS03080 - ATP-dependent Clp protease ATP-binding subunit ClpX, at 15,353 to 16,603
_RS03080
HMPREF1058_RS03075: HMPREF1058_RS03075 - DNA helicase RecQ, at 16,761 to 18,941
_RS03075
HMPREF1058_RS03070: HMPREF1058_RS03070 - tetratricopeptide repeat protein, at 19,080 to 20,843
_RS03070
Position (kb) 16
17
18
19 Strain fitness (log2 ratio) -2
-1
0
1 at 15.872 kb on - strand, within HMPREF1058_RS03080 at 15.940 kb on + strand, within HMPREF1058_RS03080 at 15.952 kb on + strand, within HMPREF1058_RS03080 at 15.978 kb on + strand, within HMPREF1058_RS03080 at 15.978 kb on + strand, within HMPREF1058_RS03080 at 15.978 kb on + strand, within HMPREF1058_RS03080 at 16.158 kb on + strand, within HMPREF1058_RS03080 at 16.191 kb on + strand, within HMPREF1058_RS03080 at 16.214 kb on + strand, within HMPREF1058_RS03080 at 16.216 kb on + strand, within HMPREF1058_RS03080 at 16.217 kb on - strand, within HMPREF1058_RS03080 at 16.286 kb on + strand, within HMPREF1058_RS03080 at 16.286 kb on + strand, within HMPREF1058_RS03080 at 16.321 kb on + strand, within HMPREF1058_RS03080 at 16.364 kb on - strand, within HMPREF1058_RS03080 at 16.420 kb on + strand, within HMPREF1058_RS03080 at 16.420 kb on + strand, within HMPREF1058_RS03080 at 16.420 kb on + strand, within HMPREF1058_RS03080 at 16.425 kb on + strand, within HMPREF1058_RS03080 at 16.435 kb on + strand, within HMPREF1058_RS03080 at 16.442 kb on + strand, within HMPREF1058_RS03080 at 16.445 kb on - strand, within HMPREF1058_RS03080 at 16.601 kb on + strand at 16.601 kb on + strand at 16.655 kb on + strand at 16.692 kb on + strand at 16.719 kb on + strand at 16.757 kb on + strand at 16.952 kb on + strand at 17.062 kb on + strand, within HMPREF1058_RS03075 at 17.062 kb on + strand, within HMPREF1058_RS03075 at 17.109 kb on + strand, within HMPREF1058_RS03075 at 17.255 kb on + strand, within HMPREF1058_RS03075 at 17.266 kb on + strand, within HMPREF1058_RS03075 at 17.444 kb on + strand, within HMPREF1058_RS03075 at 17.474 kb on + strand, within HMPREF1058_RS03075 at 17.474 kb on + strand, within HMPREF1058_RS03075 at 17.478 kb on + strand, within HMPREF1058_RS03075 at 17.573 kb on + strand, within HMPREF1058_RS03075 at 17.573 kb on + strand, within HMPREF1058_RS03075 at 17.612 kb on + strand, within HMPREF1058_RS03075 at 17.626 kb on + strand, within HMPREF1058_RS03075 at 17.680 kb on + strand, within HMPREF1058_RS03075 at 17.680 kb on + strand, within HMPREF1058_RS03075 at 17.685 kb on + strand, within HMPREF1058_RS03075 at 17.885 kb on + strand, within HMPREF1058_RS03075 at 17.928 kb on + strand, within HMPREF1058_RS03075 at 18.058 kb on + strand, within HMPREF1058_RS03075 at 18.199 kb on + strand, within HMPREF1058_RS03075 at 18.962 kb on + strand at 18.967 kb on - strand at 19.015 kb on - strand at 19.017 kb on - strand at 19.022 kb on - strand at 19.051 kb on - strand at 19.053 kb on - strand at 19.176 kb on + strand at 19.308 kb on - strand, within HMPREF1058_RS03070 at 19.308 kb on - strand, within HMPREF1058_RS03070 at 19.390 kb on - strand, within HMPREF1058_RS03070 at 19.404 kb on + strand, within HMPREF1058_RS03070 at 19.443 kb on + strand, within HMPREF1058_RS03070 at 19.488 kb on + strand, within HMPREF1058_RS03070 at 19.489 kb on - strand, within HMPREF1058_RS03070 at 19.563 kb on + strand, within HMPREF1058_RS03070 at 19.565 kb on + strand, within HMPREF1058_RS03070 at 19.565 kb on + strand, within HMPREF1058_RS03070 at 19.565 kb on + strand, within HMPREF1058_RS03070 at 19.566 kb on - strand, within HMPREF1058_RS03070 at 19.595 kb on - strand, within HMPREF1058_RS03070 at 19.618 kb on + strand, within HMPREF1058_RS03070 at 19.648 kb on + strand, within HMPREF1058_RS03070 at 19.667 kb on + strand, within HMPREF1058_RS03070 at 19.680 kb on + strand, within HMPREF1058_RS03070 at 19.681 kb on - strand, within HMPREF1058_RS03070 at 19.697 kb on - strand, within HMPREF1058_RS03070 at 19.760 kb on + strand, within HMPREF1058_RS03070 at 19.760 kb on + strand, within HMPREF1058_RS03070 at 19.801 kb on + strand, within HMPREF1058_RS03070 at 19.805 kb on - strand, within HMPREF1058_RS03070 at 19.823 kb on + strand, within HMPREF1058_RS03070 at 19.824 kb on - strand, within HMPREF1058_RS03070 at 19.825 kb on + strand, within HMPREF1058_RS03070 at 19.825 kb on + strand, within HMPREF1058_RS03070 at 19.825 kb on + strand, within HMPREF1058_RS03070 at 19.826 kb on - strand, within HMPREF1058_RS03070 at 19.867 kb on + strand, within HMPREF1058_RS03070 at 19.868 kb on - strand, within HMPREF1058_RS03070 at 19.868 kb on - strand, within HMPREF1058_RS03070 at 19.870 kb on - strand, within HMPREF1058_RS03070 at 19.870 kb on - strand, within HMPREF1058_RS03070 at 19.873 kb on + strand, within HMPREF1058_RS03070 at 19.873 kb on + strand, within HMPREF1058_RS03070 at 19.873 kb on + strand, within HMPREF1058_RS03070 at 19.874 kb on - strand, within HMPREF1058_RS03070 at 19.874 kb on - strand, within HMPREF1058_RS03070 at 19.900 kb on + strand, within HMPREF1058_RS03070 at 19.903 kb on - strand, within HMPREF1058_RS03070 at 19.903 kb on - strand, within HMPREF1058_RS03070 at 19.903 kb on - strand, within HMPREF1058_RS03070 at 19.915 kb on - strand, within HMPREF1058_RS03070 at 19.918 kb on + strand, within HMPREF1058_RS03070 at 19.919 kb on - strand, within HMPREF1058_RS03070
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse18; day2 remove 15,872 - HMPREF1058_RS03080 0.41 -0.1 15,940 + HMPREF1058_RS03080 0.47 -2.5 15,952 + HMPREF1058_RS03080 0.48 -0.8 15,978 + HMPREF1058_RS03080 0.50 -1.2 15,978 + HMPREF1058_RS03080 0.50 -0.4 15,978 + HMPREF1058_RS03080 0.50 -1.1 16,158 + HMPREF1058_RS03080 0.64 -0.6 16,191 + HMPREF1058_RS03080 0.67 -1.0 16,214 + HMPREF1058_RS03080 0.69 -1.2 16,216 + HMPREF1058_RS03080 0.69 -0.6 16,217 - HMPREF1058_RS03080 0.69 -0.7 16,286 + HMPREF1058_RS03080 0.75 -0.3 16,286 + HMPREF1058_RS03080 0.75 +0.1 16,321 + HMPREF1058_RS03080 0.77 +0.2 16,364 - HMPREF1058_RS03080 0.81 -1.1 16,420 + HMPREF1058_RS03080 0.85 -1.4 16,420 + HMPREF1058_RS03080 0.85 -0.8 16,420 + HMPREF1058_RS03080 0.85 -1.3 16,425 + HMPREF1058_RS03080 0.86 -0.9 16,435 + HMPREF1058_RS03080 0.86 +0.4 16,442 + HMPREF1058_RS03080 0.87 -0.5 16,445 - HMPREF1058_RS03080 0.87 -0.1 16,601 + +0.5 16,601 + +0.7 16,655 + -2.3 16,692 + -0.4 16,719 + +0.3 16,757 + -1.1 16,952 + +0.5 17,062 + HMPREF1058_RS03075 0.14 -1.3 17,062 + HMPREF1058_RS03075 0.14 -0.3 17,109 + HMPREF1058_RS03075 0.16 -0.4 17,255 + HMPREF1058_RS03075 0.23 -0.4 17,266 + HMPREF1058_RS03075 0.23 -0.1 17,444 + HMPREF1058_RS03075 0.31 +0.7 17,474 + HMPREF1058_RS03075 0.33 +0.1 17,474 + HMPREF1058_RS03075 0.33 +1.6 17,478 + HMPREF1058_RS03075 0.33 -0.2 17,573 + HMPREF1058_RS03075 0.37 +0.1 17,573 + HMPREF1058_RS03075 0.37 +1.3 17,612 + HMPREF1058_RS03075 0.39 +1.1 17,626 + HMPREF1058_RS03075 0.40 +1.4 17,680 + HMPREF1058_RS03075 0.42 +0.7 17,680 + HMPREF1058_RS03075 0.42 +0.4 17,685 + HMPREF1058_RS03075 0.42 +0.3 17,885 + HMPREF1058_RS03075 0.52 -1.1 17,928 + HMPREF1058_RS03075 0.54 +1.5 18,058 + HMPREF1058_RS03075 0.59 -2.1 18,199 + HMPREF1058_RS03075 0.66 -0.1 18,962 + -0.9 18,967 - +0.9 19,015 - +0.3 19,017 - -0.9 19,022 - -0.4 19,051 - +0.3 19,053 - +0.5 19,176 + +0.1 19,308 - HMPREF1058_RS03070 0.13 +0.1 19,308 - HMPREF1058_RS03070 0.13 -0.5 19,390 - HMPREF1058_RS03070 0.18 +1.3 19,404 + HMPREF1058_RS03070 0.18 +0.4 19,443 + HMPREF1058_RS03070 0.21 -0.0 19,488 + HMPREF1058_RS03070 0.23 +0.7 19,489 - HMPREF1058_RS03070 0.23 -2.4 19,563 + HMPREF1058_RS03070 0.27 -0.5 19,565 + HMPREF1058_RS03070 0.27 +0.4 19,565 + HMPREF1058_RS03070 0.27 -1.3 19,565 + HMPREF1058_RS03070 0.27 -0.1 19,566 - HMPREF1058_RS03070 0.28 +0.6 19,595 - HMPREF1058_RS03070 0.29 -0.0 19,618 + HMPREF1058_RS03070 0.30 -0.6 19,648 + HMPREF1058_RS03070 0.32 +0.5 19,667 + HMPREF1058_RS03070 0.33 +0.4 19,680 + HMPREF1058_RS03070 0.34 +0.4 19,681 - HMPREF1058_RS03070 0.34 -0.1 19,697 - HMPREF1058_RS03070 0.35 +0.7 19,760 + HMPREF1058_RS03070 0.39 -0.2 19,760 + HMPREF1058_RS03070 0.39 -0.3 19,801 + HMPREF1058_RS03070 0.41 -0.2 19,805 - HMPREF1058_RS03070 0.41 +0.1 19,823 + HMPREF1058_RS03070 0.42 -0.1 19,824 - HMPREF1058_RS03070 0.42 +0.5 19,825 + HMPREF1058_RS03070 0.42 +0.0 19,825 + HMPREF1058_RS03070 0.42 -0.5 19,825 + HMPREF1058_RS03070 0.42 +1.3 19,826 - HMPREF1058_RS03070 0.42 -1.3 19,867 + HMPREF1058_RS03070 0.45 +0.1 19,868 - HMPREF1058_RS03070 0.45 -1.1 19,868 - HMPREF1058_RS03070 0.45 +0.2 19,870 - HMPREF1058_RS03070 0.45 +1.1 19,870 - HMPREF1058_RS03070 0.45 +0.8 19,873 + HMPREF1058_RS03070 0.45 +0.6 19,873 + HMPREF1058_RS03070 0.45 +0.6 19,873 + HMPREF1058_RS03070 0.45 -0.5 19,874 - HMPREF1058_RS03070 0.45 -0.1 19,874 - HMPREF1058_RS03070 0.45 +0.6 19,900 + HMPREF1058_RS03070 0.46 -0.6 19,903 - HMPREF1058_RS03070 0.47 +0.1 19,903 - HMPREF1058_RS03070 0.47 +0.5 19,903 - HMPREF1058_RS03070 0.47 +0.3 19,915 - HMPREF1058_RS03070 0.47 -0.2 19,918 + HMPREF1058_RS03070 0.48 -0.3 19,919 - HMPREF1058_RS03070 0.48 +0.3
Or see this region's nucleotide sequence