Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse18; day2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS11155 and HMPREF1058_RS0119645 overlap by 26 nucleotides HMPREF1058_RS0119645 and HMPREF1058_RS11150 are separated by 191 nucleotides
HMPREF1058_RS11155: HMPREF1058_RS11155 - PD-(D/E)XK nuclease domain-containing protein, at 452,992 to 453,573
_RS11155
HMPREF1058_RS0119645: HMPREF1058_RS0119645 - AAA family ATPase, at 453,548 to 453,847
_RS0119645
HMPREF1058_RS11150: HMPREF1058_RS11150 - TonB-dependent receptor, at 454,039 to 457,068
_RS11150
Position (kb) 453
454 Strain fitness (log2 ratio) -1
0
1
2 at 452.564 kb on + strand at 452.660 kb on - strand at 452.690 kb on - strand at 452.717 kb on + strand at 452.718 kb on - strand at 452.810 kb on + strand at 452.966 kb on + strand at 453.045 kb on + strand at 453.049 kb on + strand at 453.050 kb on - strand at 453.050 kb on - strand at 453.058 kb on - strand, within HMPREF1058_RS11155 at 453.167 kb on + strand, within HMPREF1058_RS11155 at 453.211 kb on - strand, within HMPREF1058_RS11155 at 453.392 kb on + strand, within HMPREF1058_RS11155 at 453.413 kb on + strand, within HMPREF1058_RS11155 at 453.414 kb on - strand, within HMPREF1058_RS11155 at 453.414 kb on - strand, within HMPREF1058_RS11155 at 453.476 kb on + strand, within HMPREF1058_RS11155 at 453.477 kb on - strand, within HMPREF1058_RS11155 at 453.477 kb on - strand, within HMPREF1058_RS11155 at 453.491 kb on + strand, within HMPREF1058_RS11155 at 453.511 kb on + strand, within HMPREF1058_RS11155 at 453.511 kb on + strand, within HMPREF1058_RS11155 at 453.512 kb on - strand, within HMPREF1058_RS11155 at 453.600 kb on - strand, within HMPREF1058_RS0119645 at 453.642 kb on + strand, within HMPREF1058_RS0119645 at 453.645 kb on + strand, within HMPREF1058_RS0119645 at 453.714 kb on + strand, within HMPREF1058_RS0119645 at 453.715 kb on - strand, within HMPREF1058_RS0119645 at 453.762 kb on + strand, within HMPREF1058_RS0119645 at 453.806 kb on + strand, within HMPREF1058_RS0119645 at 453.848 kb on - strand at 453.848 kb on - strand at 453.893 kb on - strand at 453.902 kb on + strand at 454.013 kb on - strand at 454.013 kb on - strand at 454.013 kb on - strand at 454.161 kb on + strand at 454.298 kb on - strand at 454.338 kb on - strand at 454.342 kb on + strand, within HMPREF1058_RS11150 at 454.342 kb on + strand, within HMPREF1058_RS11150 at 454.342 kb on + strand, within HMPREF1058_RS11150 at 454.343 kb on - strand, within HMPREF1058_RS11150 at 454.343 kb on - strand, within HMPREF1058_RS11150 at 454.344 kb on + strand, within HMPREF1058_RS11150 at 454.344 kb on + strand, within HMPREF1058_RS11150 at 454.396 kb on - strand, within HMPREF1058_RS11150 at 454.398 kb on + strand, within HMPREF1058_RS11150 at 454.399 kb on - strand, within HMPREF1058_RS11150 at 454.401 kb on + strand, within HMPREF1058_RS11150 at 454.472 kb on + strand, within HMPREF1058_RS11150 at 454.673 kb on + strand, within HMPREF1058_RS11150 at 454.673 kb on + strand, within HMPREF1058_RS11150 at 454.674 kb on - strand, within HMPREF1058_RS11150 at 454.674 kb on - strand, within HMPREF1058_RS11150 at 454.709 kb on + strand, within HMPREF1058_RS11150 at 454.709 kb on + strand, within HMPREF1058_RS11150 at 454.750 kb on - strand, within HMPREF1058_RS11150 at 454.842 kb on + strand, within HMPREF1058_RS11150
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse18; day2 remove 452,564 + +0.6 452,660 - +0.4 452,690 - +0.4 452,717 + +0.7 452,718 - +0.6 452,810 + -0.2 452,966 + +0.2 453,045 + +0.5 453,049 + +0.3 453,050 - +0.4 453,050 - +0.2 453,058 - HMPREF1058_RS11155 0.11 +0.2 453,167 + HMPREF1058_RS11155 0.30 -0.4 453,211 - HMPREF1058_RS11155 0.38 +0.4 453,392 + HMPREF1058_RS11155 0.69 +1.8 453,413 + HMPREF1058_RS11155 0.72 -0.3 453,414 - HMPREF1058_RS11155 0.73 -1.1 453,414 - HMPREF1058_RS11155 0.73 -1.1 453,476 + HMPREF1058_RS11155 0.83 -0.1 453,477 - HMPREF1058_RS11155 0.83 -0.1 453,477 - HMPREF1058_RS11155 0.83 +0.0 453,491 + HMPREF1058_RS11155 0.86 +0.8 453,511 + HMPREF1058_RS11155 0.89 +0.6 453,511 + HMPREF1058_RS11155 0.89 +0.5 453,512 - HMPREF1058_RS11155 0.89 +0.5 453,600 - HMPREF1058_RS0119645 0.17 +0.5 453,642 + HMPREF1058_RS0119645 0.31 +0.8 453,645 + HMPREF1058_RS0119645 0.32 +0.8 453,714 + HMPREF1058_RS0119645 0.55 +1.2 453,715 - HMPREF1058_RS0119645 0.56 +0.2 453,762 + HMPREF1058_RS0119645 0.71 +0.6 453,806 + HMPREF1058_RS0119645 0.86 +0.4 453,848 - +0.3 453,848 - +0.9 453,893 - +0.1 453,902 + +0.8 454,013 - -0.3 454,013 - -0.3 454,013 - +0.1 454,161 + +0.3 454,298 - +0.4 454,338 - -0.1 454,342 + HMPREF1058_RS11150 0.10 +0.4 454,342 + HMPREF1058_RS11150 0.10 -0.6 454,342 + HMPREF1058_RS11150 0.10 +0.0 454,343 - HMPREF1058_RS11150 0.10 +0.6 454,343 - HMPREF1058_RS11150 0.10 +0.4 454,344 + HMPREF1058_RS11150 0.10 -0.3 454,344 + HMPREF1058_RS11150 0.10 +0.1 454,396 - HMPREF1058_RS11150 0.12 +0.2 454,398 + HMPREF1058_RS11150 0.12 +0.2 454,399 - HMPREF1058_RS11150 0.12 -1.0 454,401 + HMPREF1058_RS11150 0.12 +0.1 454,472 + HMPREF1058_RS11150 0.14 +0.8 454,673 + HMPREF1058_RS11150 0.21 -0.2 454,673 + HMPREF1058_RS11150 0.21 -0.1 454,674 - HMPREF1058_RS11150 0.21 -0.0 454,674 - HMPREF1058_RS11150 0.21 -0.1 454,709 + HMPREF1058_RS11150 0.22 -0.3 454,709 + HMPREF1058_RS11150 0.22 -0.2 454,750 - HMPREF1058_RS11150 0.23 -0.2 454,842 + HMPREF1058_RS11150 0.27 -0.7
Or see this region's nucleotide sequence