Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse15; day2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS07950 and HMPREF1058_RS07945 are separated by 71 nucleotides HMPREF1058_RS07945 and HMPREF1058_RS07940 are separated by 14 nucleotides HMPREF1058_RS07940 and HMPREF1058_RS07935 are separated by 6 nucleotides
HMPREF1058_RS07950: HMPREF1058_RS07950 - LysE family translocator, at 97,163 to 97,822
_RS07950
HMPREF1058_RS07945: HMPREF1058_RS07945 - DUF4924 family protein, at 97,894 to 98,436
_RS07945
HMPREF1058_RS07940: HMPREF1058_RS07940 - dTDP-4-dehydrorhamnose reductase, at 98,451 to 99,308
_RS07940
HMPREF1058_RS07935: HMPREF1058_RS07935 - peptide chain release factor 3, at 99,315 to 100,883
_RS07935
Position (kb) 98
99
100 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 97.833 kb on + strand at 97.833 kb on + strand at 97.943 kb on + strand at 97.945 kb on + strand at 97.945 kb on + strand at 97.945 kb on + strand at 97.945 kb on + strand at 97.945 kb on + strand at 97.945 kb on + strand at 97.947 kb on + strand at 97.947 kb on + strand at 97.947 kb on + strand at 97.989 kb on + strand, within HMPREF1058_RS07945 at 98.015 kb on + strand, within HMPREF1058_RS07945 at 98.141 kb on + strand, within HMPREF1058_RS07945 at 98.197 kb on + strand, within HMPREF1058_RS07945 at 98.199 kb on + strand, within HMPREF1058_RS07945 at 98.209 kb on + strand, within HMPREF1058_RS07945 at 98.229 kb on + strand, within HMPREF1058_RS07945 at 98.304 kb on + strand, within HMPREF1058_RS07945 at 98.309 kb on + strand, within HMPREF1058_RS07945 at 98.309 kb on + strand, within HMPREF1058_RS07945 at 98.398 kb on + strand at 98.401 kb on + strand at 98.401 kb on + strand at 98.401 kb on + strand at 98.403 kb on + strand at 98.405 kb on + strand at 98.405 kb on + strand at 98.405 kb on + strand at 99.287 kb on + strand at 99.672 kb on - strand, within HMPREF1058_RS07935 at 99.938 kb on - strand, within HMPREF1058_RS07935 at 100.221 kb on - strand, within HMPREF1058_RS07935
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse15; day2 remove 97,833 + -0.9 97,833 + +0.7 97,943 + -0.4 97,945 + +1.1 97,945 + +1.1 97,945 + -1.5 97,945 + -0.6 97,945 + -1.0 97,945 + -0.9 97,947 + -0.4 97,947 + +0.0 97,947 + -0.7 97,989 + HMPREF1058_RS07945 0.17 -2.2 98,015 + HMPREF1058_RS07945 0.22 -0.3 98,141 + HMPREF1058_RS07945 0.45 -0.5 98,197 + HMPREF1058_RS07945 0.56 -2.3 98,199 + HMPREF1058_RS07945 0.56 -0.2 98,209 + HMPREF1058_RS07945 0.58 -0.7 98,229 + HMPREF1058_RS07945 0.62 -1.1 98,304 + HMPREF1058_RS07945 0.76 -1.1 98,309 + HMPREF1058_RS07945 0.76 -0.3 98,309 + HMPREF1058_RS07945 0.76 +0.0 98,398 + -0.8 98,401 + -1.1 98,401 + +0.8 98,401 + -0.8 98,403 + -1.3 98,405 + +0.6 98,405 + -0.0 98,405 + +0.5 99,287 + -4.9 99,672 - HMPREF1058_RS07935 0.23 -1.5 99,938 - HMPREF1058_RS07935 0.40 -2.2 100,221 - HMPREF1058_RS07935 0.58 -3.1
Or see this region's nucleotide sequence