Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse16; day5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS06940 and HMPREF1058_RS06935 are separated by 288 nucleotides HMPREF1058_RS06935 and HMPREF1058_RS06930 are separated by 247 nucleotides HMPREF1058_RS06930 and HMPREF1058_RS06925 are separated by 16 nucleotides
HMPREF1058_RS06940: HMPREF1058_RS06940 - carboxypeptidase regulatory-like domain-containing protein, at 351,220 to 352,044
_RS06940
HMPREF1058_RS06935: HMPREF1058_RS06935 - AAA family ATPase, at 352,333 to 352,575
_RS06935
HMPREF1058_RS06930: HMPREF1058_RS06930 - asparagine synthase B, at 352,823 to 354,493
_RS06930
HMPREF1058_RS06925: HMPREF1058_RS06925 - glutamate synthase subunit beta, at 354,510 to 355,850
_RS06925
Position (kb) 352
353
354
355 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 351.836 kb on + strand, within HMPREF1058_RS06940 at 351.836 kb on + strand, within HMPREF1058_RS06940 at 351.836 kb on + strand, within HMPREF1058_RS06940 at 351.978 kb on - strand at 352.051 kb on - strand at 352.117 kb on - strand at 352.131 kb on + strand at 352.212 kb on + strand at 352.213 kb on - strand at 352.330 kb on + strand at 352.340 kb on + strand at 352.353 kb on - strand at 352.388 kb on + strand, within HMPREF1058_RS06935 at 352.405 kb on + strand, within HMPREF1058_RS06935 at 352.439 kb on - strand, within HMPREF1058_RS06935 at 352.439 kb on - strand, within HMPREF1058_RS06935 at 352.439 kb on - strand, within HMPREF1058_RS06935 at 352.439 kb on - strand, within HMPREF1058_RS06935 at 352.452 kb on - strand, within HMPREF1058_RS06935 at 352.499 kb on + strand, within HMPREF1058_RS06935 at 352.594 kb on + strand at 352.594 kb on + strand at 352.600 kb on + strand at 352.602 kb on + strand at 352.661 kb on + strand at 352.661 kb on + strand at 352.758 kb on - strand at 352.784 kb on + strand at 352.785 kb on - strand at 352.785 kb on - strand at 352.834 kb on - strand at 352.922 kb on - strand at 353.004 kb on + strand, within HMPREF1058_RS06930 at 353.005 kb on - strand, within HMPREF1058_RS06930 at 353.116 kb on + strand, within HMPREF1058_RS06930 at 353.117 kb on - strand, within HMPREF1058_RS06930 at 353.159 kb on + strand, within HMPREF1058_RS06930 at 353.159 kb on + strand, within HMPREF1058_RS06930 at 353.258 kb on + strand, within HMPREF1058_RS06930 at 353.259 kb on - strand, within HMPREF1058_RS06930 at 353.344 kb on - strand, within HMPREF1058_RS06930 at 353.502 kb on + strand, within HMPREF1058_RS06930 at 353.502 kb on + strand, within HMPREF1058_RS06930 at 353.503 kb on - strand, within HMPREF1058_RS06930 at 353.550 kb on + strand, within HMPREF1058_RS06930 at 353.550 kb on + strand, within HMPREF1058_RS06930 at 353.553 kb on + strand, within HMPREF1058_RS06930 at 353.593 kb on + strand, within HMPREF1058_RS06930 at 353.799 kb on - strand, within HMPREF1058_RS06930 at 353.858 kb on + strand, within HMPREF1058_RS06930 at 353.899 kb on - strand, within HMPREF1058_RS06930 at 353.952 kb on + strand, within HMPREF1058_RS06930 at 353.953 kb on - strand, within HMPREF1058_RS06930 at 353.956 kb on - strand, within HMPREF1058_RS06930 at 354.050 kb on + strand, within HMPREF1058_RS06930 at 354.051 kb on - strand, within HMPREF1058_RS06930 at 354.051 kb on - strand, within HMPREF1058_RS06930 at 354.053 kb on - strand, within HMPREF1058_RS06930 at 354.054 kb on + strand, within HMPREF1058_RS06930 at 354.055 kb on - strand, within HMPREF1058_RS06930 at 354.055 kb on - strand, within HMPREF1058_RS06930 at 354.055 kb on - strand, within HMPREF1058_RS06930 at 354.056 kb on + strand, within HMPREF1058_RS06930 at 354.056 kb on + strand, within HMPREF1058_RS06930 at 354.056 kb on + strand, within HMPREF1058_RS06930 at 354.056 kb on + strand, within HMPREF1058_RS06930 at 354.057 kb on - strand, within HMPREF1058_RS06930 at 354.115 kb on - strand, within HMPREF1058_RS06930 at 354.160 kb on + strand, within HMPREF1058_RS06930 at 354.220 kb on - strand, within HMPREF1058_RS06930 at 354.258 kb on + strand, within HMPREF1058_RS06930 at 354.304 kb on - strand, within HMPREF1058_RS06930 at 354.465 kb on - strand at 354.493 kb on + strand at 354.494 kb on - strand at 354.613 kb on - strand at 354.966 kb on + strand, within HMPREF1058_RS06925 at 355.306 kb on - strand, within HMPREF1058_RS06925
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse16; day5 remove 351,836 + HMPREF1058_RS06940 0.75 -0.9 351,836 + HMPREF1058_RS06940 0.75 -0.6 351,836 + HMPREF1058_RS06940 0.75 +1.0 351,978 - -1.3 352,051 - -0.7 352,117 - -0.7 352,131 + -0.5 352,212 + -1.0 352,213 - -2.3 352,330 + -0.0 352,340 + +1.2 352,353 - -0.3 352,388 + HMPREF1058_RS06935 0.23 +0.5 352,405 + HMPREF1058_RS06935 0.30 +0.3 352,439 - HMPREF1058_RS06935 0.44 +0.3 352,439 - HMPREF1058_RS06935 0.44 -0.1 352,439 - HMPREF1058_RS06935 0.44 +0.8 352,439 - HMPREF1058_RS06935 0.44 -0.2 352,452 - HMPREF1058_RS06935 0.49 +0.2 352,499 + HMPREF1058_RS06935 0.68 -0.2 352,594 + +1.2 352,594 + +0.2 352,600 + +0.8 352,602 + -0.2 352,661 + -2.2 352,661 + +0.3 352,758 - -3.3 352,784 + -2.4 352,785 - +0.2 352,785 - +0.3 352,834 - -1.9 352,922 - -0.2 353,004 + HMPREF1058_RS06930 0.11 +0.3 353,005 - HMPREF1058_RS06930 0.11 -2.0 353,116 + HMPREF1058_RS06930 0.18 -2.0 353,117 - HMPREF1058_RS06930 0.18 -3.3 353,159 + HMPREF1058_RS06930 0.20 +0.7 353,159 + HMPREF1058_RS06930 0.20 -1.4 353,258 + HMPREF1058_RS06930 0.26 -1.8 353,259 - HMPREF1058_RS06930 0.26 -1.5 353,344 - HMPREF1058_RS06930 0.31 -0.5 353,502 + HMPREF1058_RS06930 0.41 -1.3 353,502 + HMPREF1058_RS06930 0.41 -1.3 353,503 - HMPREF1058_RS06930 0.41 +0.3 353,550 + HMPREF1058_RS06930 0.44 +0.3 353,550 + HMPREF1058_RS06930 0.44 -2.2 353,553 + HMPREF1058_RS06930 0.44 -1.6 353,593 + HMPREF1058_RS06930 0.46 -2.2 353,799 - HMPREF1058_RS06930 0.58 -0.3 353,858 + HMPREF1058_RS06930 0.62 -0.7 353,899 - HMPREF1058_RS06930 0.64 -1.5 353,952 + HMPREF1058_RS06930 0.68 -2.0 353,953 - HMPREF1058_RS06930 0.68 -1.8 353,956 - HMPREF1058_RS06930 0.68 -0.8 354,050 + HMPREF1058_RS06930 0.73 -0.0 354,051 - HMPREF1058_RS06930 0.73 -0.5 354,051 - HMPREF1058_RS06930 0.73 -1.6 354,053 - HMPREF1058_RS06930 0.74 -3.2 354,054 + HMPREF1058_RS06930 0.74 -0.4 354,055 - HMPREF1058_RS06930 0.74 +0.8 354,055 - HMPREF1058_RS06930 0.74 -3.8 354,055 - HMPREF1058_RS06930 0.74 -3.1 354,056 + HMPREF1058_RS06930 0.74 -1.0 354,056 + HMPREF1058_RS06930 0.74 -0.0 354,056 + HMPREF1058_RS06930 0.74 -1.9 354,056 + HMPREF1058_RS06930 0.74 -1.0 354,057 - HMPREF1058_RS06930 0.74 -1.2 354,115 - HMPREF1058_RS06930 0.77 -0.3 354,160 + HMPREF1058_RS06930 0.80 +2.0 354,220 - HMPREF1058_RS06930 0.84 -0.8 354,258 + HMPREF1058_RS06930 0.86 -1.8 354,304 - HMPREF1058_RS06930 0.89 -2.3 354,465 - -0.4 354,493 + -1.7 354,494 - -0.4 354,613 - -1.6 354,966 + HMPREF1058_RS06925 0.34 -0.9 355,306 - HMPREF1058_RS06925 0.59 +0.5
Or see this region's nucleotide sequence