Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse16; day5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS04560 and HMPREF1058_RS04555 overlap by 4 nucleotides HMPREF1058_RS04555 and HMPREF1058_RS04550 overlap by 1 nucleotides HMPREF1058_RS04550 and HMPREF1058_RS04545 are separated by 21 nucleotides HMPREF1058_RS04545 and HMPREF1058_RS04540 overlap by 8 nucleotides HMPREF1058_RS04540 and HMPREF1058_RS04530 are separated by 286 nucleotides HMPREF1058_RS04530 and HMPREF1058_RS21520 are separated by 39 nucleotides
HMPREF1058_RS04560: HMPREF1058_RS04560 - hypothetical protein, at 8,402 to 8,863
_RS04560
HMPREF1058_RS04555: HMPREF1058_RS04555 - YqaJ viral recombinase family protein, at 8,860 to 9,531
_RS04555
HMPREF1058_RS04550: HMPREF1058_RS04550 - hypothetical protein, at 9,531 to 10,295
_RS04550
HMPREF1058_RS04545: HMPREF1058_RS04545 - hypothetical protein, at 10,317 to 10,553
_RS04545
HMPREF1058_RS04540: HMPREF1058_RS04540 - hypothetical protein, at 10,546 to 10,728
_RS04540
HMPREF1058_RS04530: HMPREF1058_RS04530 - hypothetical protein, at 11,015 to 11,221
_RS04530
HMPREF1058_RS21520: HMPREF1058_RS21520 - hypothetical protein, at 11,261 to 11,434
_RS21520
Position (kb) 9
10
11 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 8.579 kb on + strand, within HMPREF1058_RS04560 at 8.592 kb on + strand, within HMPREF1058_RS04560 at 8.726 kb on + strand, within HMPREF1058_RS04560 at 8.816 kb on + strand, within HMPREF1058_RS04560 at 8.821 kb on + strand at 9.027 kb on + strand, within HMPREF1058_RS04555 at 9.099 kb on + strand, within HMPREF1058_RS04555 at 9.240 kb on + strand, within HMPREF1058_RS04555 at 9.263 kb on + strand, within HMPREF1058_RS04555 at 9.511 kb on + strand at 9.513 kb on + strand at 9.532 kb on + strand at 9.557 kb on + strand at 9.557 kb on + strand at 9.685 kb on + strand, within HMPREF1058_RS04550 at 10.168 kb on + strand, within HMPREF1058_RS04550 at 10.324 kb on + strand at 10.324 kb on + strand at 10.442 kb on + strand, within HMPREF1058_RS04545 at 10.729 kb on + strand at 10.729 kb on + strand at 10.847 kb on + strand at 10.847 kb on + strand at 11.039 kb on + strand, within HMPREF1058_RS04530 at 11.058 kb on + strand, within HMPREF1058_RS04530 at 11.102 kb on + strand, within HMPREF1058_RS04530 at 11.235 kb on + strand at 11.244 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse16; day5 remove 8,579 + HMPREF1058_RS04560 0.38 -1.2 8,592 + HMPREF1058_RS04560 0.41 +0.4 8,726 + HMPREF1058_RS04560 0.70 +0.4 8,816 + HMPREF1058_RS04560 0.90 -0.9 8,821 + -0.1 9,027 + HMPREF1058_RS04555 0.25 +0.3 9,099 + HMPREF1058_RS04555 0.36 -0.9 9,240 + HMPREF1058_RS04555 0.57 +0.5 9,263 + HMPREF1058_RS04555 0.60 +0.5 9,511 + -0.5 9,513 + +0.6 9,532 + +0.2 9,557 + -0.6 9,557 + -2.6 9,685 + HMPREF1058_RS04550 0.20 -3.6 10,168 + HMPREF1058_RS04550 0.83 -1.9 10,324 + +0.6 10,324 + -1.9 10,442 + HMPREF1058_RS04545 0.53 +2.2 10,729 + -0.5 10,729 + -2.9 10,847 + +0.2 10,847 + -1.4 11,039 + HMPREF1058_RS04530 0.12 +0.4 11,058 + HMPREF1058_RS04530 0.21 +1.4 11,102 + HMPREF1058_RS04530 0.42 +0.5 11,235 + -1.9 11,244 + -0.3
Or see this region's nucleotide sequence