Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse17; day1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS11170 and HMPREF1058_RS11165 are separated by 34 nucleotides HMPREF1058_RS11165 and HMPREF1058_RS11160 are separated by 378 nucleotides
HMPREF1058_RS11170: HMPREF1058_RS11170 - TonB-dependent receptor, at 445,527 to 448,691
_RS11170
HMPREF1058_RS11165: HMPREF1058_RS11165 - glycoside hydrolase family 127 protein, at 448,726 to 451,161
_RS11165
HMPREF1058_RS11160: HMPREF1058_RS11160 - master DNA invertase Mpi family serine-type recombinase, at 451,540 to 452,151
_RS11160
Position (kb) 448
449
450
451
452 Strain fitness (log2 ratio) -1
0
1
2
3 at 447.734 kb on + strand, within HMPREF1058_RS11170 at 447.738 kb on - strand, within HMPREF1058_RS11170 at 447.777 kb on + strand, within HMPREF1058_RS11170 at 447.778 kb on - strand, within HMPREF1058_RS11170 at 447.794 kb on - strand, within HMPREF1058_RS11170 at 447.831 kb on + strand, within HMPREF1058_RS11170 at 447.831 kb on + strand, within HMPREF1058_RS11170 at 447.836 kb on - strand, within HMPREF1058_RS11170 at 447.836 kb on - strand, within HMPREF1058_RS11170 at 447.894 kb on + strand, within HMPREF1058_RS11170 at 447.895 kb on - strand, within HMPREF1058_RS11170 at 447.895 kb on - strand, within HMPREF1058_RS11170 at 447.899 kb on + strand, within HMPREF1058_RS11170 at 447.907 kb on + strand, within HMPREF1058_RS11170 at 447.908 kb on - strand, within HMPREF1058_RS11170 at 447.957 kb on + strand, within HMPREF1058_RS11170 at 447.982 kb on + strand, within HMPREF1058_RS11170 at 447.982 kb on + strand, within HMPREF1058_RS11170 at 447.982 kb on + strand, within HMPREF1058_RS11170 at 447.982 kb on + strand, within HMPREF1058_RS11170 at 447.983 kb on - strand, within HMPREF1058_RS11170 at 447.983 kb on - strand, within HMPREF1058_RS11170 at 447.986 kb on + strand, within HMPREF1058_RS11170 at 447.987 kb on - strand, within HMPREF1058_RS11170 at 448.017 kb on - strand, within HMPREF1058_RS11170 at 448.017 kb on - strand, within HMPREF1058_RS11170 at 448.091 kb on + strand, within HMPREF1058_RS11170 at 448.163 kb on + strand, within HMPREF1058_RS11170 at 448.164 kb on - strand, within HMPREF1058_RS11170 at 448.197 kb on - strand, within HMPREF1058_RS11170 at 448.197 kb on - strand, within HMPREF1058_RS11170 at 448.300 kb on - strand, within HMPREF1058_RS11170 at 448.302 kb on + strand, within HMPREF1058_RS11170 at 448.302 kb on + strand, within HMPREF1058_RS11170 at 448.383 kb on - strand at 448.398 kb on + strand at 448.404 kb on + strand at 448.404 kb on + strand at 448.439 kb on + strand at 448.458 kb on - strand at 448.458 kb on - strand at 448.458 kb on - strand at 448.458 kb on - strand at 448.565 kb on + strand at 448.703 kb on - strand at 448.894 kb on - strand at 448.937 kb on + strand at 448.937 kb on + strand at 448.937 kb on + strand at 448.966 kb on + strand at 448.980 kb on + strand, within HMPREF1058_RS11165 at 448.981 kb on - strand, within HMPREF1058_RS11165 at 448.982 kb on + strand, within HMPREF1058_RS11165 at 449.156 kb on - strand, within HMPREF1058_RS11165 at 449.184 kb on + strand, within HMPREF1058_RS11165 at 449.328 kb on + strand, within HMPREF1058_RS11165 at 449.375 kb on + strand, within HMPREF1058_RS11165 at 449.375 kb on + strand, within HMPREF1058_RS11165 at 449.461 kb on - strand, within HMPREF1058_RS11165 at 449.464 kb on - strand, within HMPREF1058_RS11165 at 449.503 kb on + strand, within HMPREF1058_RS11165 at 449.531 kb on - strand, within HMPREF1058_RS11165 at 449.582 kb on - strand, within HMPREF1058_RS11165 at 449.763 kb on + strand, within HMPREF1058_RS11165 at 449.809 kb on + strand, within HMPREF1058_RS11165 at 449.892 kb on + strand, within HMPREF1058_RS11165 at 449.892 kb on + strand, within HMPREF1058_RS11165 at 449.892 kb on + strand, within HMPREF1058_RS11165 at 449.892 kb on + strand, within HMPREF1058_RS11165 at 449.893 kb on - strand, within HMPREF1058_RS11165 at 449.895 kb on - strand, within HMPREF1058_RS11165 at 449.895 kb on - strand, within HMPREF1058_RS11165 at 449.895 kb on - strand, within HMPREF1058_RS11165 at 449.903 kb on - strand, within HMPREF1058_RS11165 at 450.047 kb on + strand, within HMPREF1058_RS11165 at 450.047 kb on + strand, within HMPREF1058_RS11165 at 450.074 kb on + strand, within HMPREF1058_RS11165 at 450.102 kb on + strand, within HMPREF1058_RS11165 at 450.247 kb on - strand, within HMPREF1058_RS11165 at 450.279 kb on - strand, within HMPREF1058_RS11165 at 450.285 kb on + strand, within HMPREF1058_RS11165 at 450.353 kb on - strand, within HMPREF1058_RS11165 at 450.356 kb on - strand, within HMPREF1058_RS11165 at 450.393 kb on + strand, within HMPREF1058_RS11165 at 450.393 kb on + strand, within HMPREF1058_RS11165 at 450.393 kb on + strand, within HMPREF1058_RS11165 at 450.439 kb on + strand, within HMPREF1058_RS11165 at 450.486 kb on + strand, within HMPREF1058_RS11165 at 450.487 kb on - strand, within HMPREF1058_RS11165 at 450.488 kb on + strand, within HMPREF1058_RS11165 at 450.516 kb on + strand, within HMPREF1058_RS11165 at 450.650 kb on + strand, within HMPREF1058_RS11165 at 450.751 kb on - strand, within HMPREF1058_RS11165 at 450.753 kb on + strand, within HMPREF1058_RS11165 at 450.754 kb on - strand, within HMPREF1058_RS11165 at 450.754 kb on - strand, within HMPREF1058_RS11165 at 450.785 kb on - strand, within HMPREF1058_RS11165 at 450.785 kb on - strand, within HMPREF1058_RS11165 at 450.796 kb on + strand, within HMPREF1058_RS11165 at 450.797 kb on - strand, within HMPREF1058_RS11165 at 450.865 kb on - strand, within HMPREF1058_RS11165 at 451.039 kb on + strand at 451.039 kb on + strand at 451.040 kb on - strand at 451.089 kb on + strand at 451.090 kb on - strand at 451.111 kb on + strand at 451.117 kb on + strand at 451.120 kb on + strand at 451.122 kb on + strand at 451.123 kb on - strand at 451.142 kb on - strand at 451.165 kb on - strand at 451.165 kb on - strand at 451.166 kb on + strand at 451.180 kb on - strand at 451.194 kb on + strand at 451.195 kb on - strand at 451.233 kb on + strand at 451.255 kb on + strand at 451.327 kb on + strand at 451.328 kb on - strand at 451.353 kb on + strand at 451.390 kb on - strand at 451.435 kb on - strand at 451.458 kb on - strand at 451.486 kb on + strand at 451.489 kb on + strand at 451.490 kb on - strand at 451.490 kb on - strand at 451.492 kb on - strand at 451.492 kb on - strand at 451.497 kb on - strand at 451.544 kb on + strand at 451.544 kb on + strand at 451.545 kb on - strand at 451.545 kb on - strand at 451.546 kb on + strand at 451.552 kb on + strand at 451.553 kb on - strand at 451.554 kb on + strand at 451.701 kb on - strand, within HMPREF1058_RS11160 at 451.715 kb on + strand, within HMPREF1058_RS11160 at 451.785 kb on + strand, within HMPREF1058_RS11160 at 451.786 kb on - strand, within HMPREF1058_RS11160 at 451.788 kb on - strand, within HMPREF1058_RS11160 at 451.800 kb on + strand, within HMPREF1058_RS11160 at 451.800 kb on + strand, within HMPREF1058_RS11160 at 451.801 kb on - strand, within HMPREF1058_RS11160 at 451.801 kb on - strand, within HMPREF1058_RS11160 at 451.801 kb on - strand, within HMPREF1058_RS11160 at 451.801 kb on - strand, within HMPREF1058_RS11160 at 451.840 kb on + strand, within HMPREF1058_RS11160 at 451.855 kb on - strand, within HMPREF1058_RS11160 at 451.996 kb on - strand, within HMPREF1058_RS11160 at 451.996 kb on - strand, within HMPREF1058_RS11160 at 452.005 kb on + strand, within HMPREF1058_RS11160 at 452.006 kb on - strand, within HMPREF1058_RS11160 at 452.040 kb on + strand, within HMPREF1058_RS11160
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse17; day1 remove 447,734 + HMPREF1058_RS11170 0.70 -0.3 447,738 - HMPREF1058_RS11170 0.70 -0.4 447,777 + HMPREF1058_RS11170 0.71 -0.1 447,778 - HMPREF1058_RS11170 0.71 -0.3 447,794 - HMPREF1058_RS11170 0.72 +0.7 447,831 + HMPREF1058_RS11170 0.73 +0.2 447,831 + HMPREF1058_RS11170 0.73 -1.3 447,836 - HMPREF1058_RS11170 0.73 +0.1 447,836 - HMPREF1058_RS11170 0.73 -0.4 447,894 + HMPREF1058_RS11170 0.75 -1.7 447,895 - HMPREF1058_RS11170 0.75 -1.5 447,895 - HMPREF1058_RS11170 0.75 -0.5 447,899 + HMPREF1058_RS11170 0.75 +0.5 447,907 + HMPREF1058_RS11170 0.75 +1.1 447,908 - HMPREF1058_RS11170 0.75 +0.2 447,957 + HMPREF1058_RS11170 0.77 -1.1 447,982 + HMPREF1058_RS11170 0.78 +0.7 447,982 + HMPREF1058_RS11170 0.78 +0.2 447,982 + HMPREF1058_RS11170 0.78 +0.1 447,982 + HMPREF1058_RS11170 0.78 -1.7 447,983 - HMPREF1058_RS11170 0.78 -0.3 447,983 - HMPREF1058_RS11170 0.78 -0.7 447,986 + HMPREF1058_RS11170 0.78 +0.2 447,987 - HMPREF1058_RS11170 0.78 +0.5 448,017 - HMPREF1058_RS11170 0.79 -0.1 448,017 - HMPREF1058_RS11170 0.79 -1.1 448,091 + HMPREF1058_RS11170 0.81 +0.3 448,163 + HMPREF1058_RS11170 0.83 +0.1 448,164 - HMPREF1058_RS11170 0.83 -0.5 448,197 - HMPREF1058_RS11170 0.84 -0.8 448,197 - HMPREF1058_RS11170 0.84 -0.1 448,300 - HMPREF1058_RS11170 0.88 -0.0 448,302 + HMPREF1058_RS11170 0.88 +0.1 448,302 + HMPREF1058_RS11170 0.88 +0.0 448,383 - +0.0 448,398 + -0.1 448,404 + +0.1 448,404 + -1.0 448,439 + +0.7 448,458 - -0.2 448,458 - +0.2 448,458 - +0.4 448,458 - +3.1 448,565 + +0.1 448,703 - -0.1 448,894 - +0.5 448,937 + -0.3 448,937 + +0.3 448,937 + +1.0 448,966 + +0.0 448,980 + HMPREF1058_RS11165 0.10 -0.7 448,981 - HMPREF1058_RS11165 0.10 +0.0 448,982 + HMPREF1058_RS11165 0.11 -0.0 449,156 - HMPREF1058_RS11165 0.18 +0.7 449,184 + HMPREF1058_RS11165 0.19 +1.2 449,328 + HMPREF1058_RS11165 0.25 +0.1 449,375 + HMPREF1058_RS11165 0.27 +0.0 449,375 + HMPREF1058_RS11165 0.27 +0.3 449,461 - HMPREF1058_RS11165 0.30 +0.2 449,464 - HMPREF1058_RS11165 0.30 -0.3 449,503 + HMPREF1058_RS11165 0.32 +0.2 449,531 - HMPREF1058_RS11165 0.33 +0.4 449,582 - HMPREF1058_RS11165 0.35 +1.0 449,763 + HMPREF1058_RS11165 0.43 -1.1 449,809 + HMPREF1058_RS11165 0.44 +0.3 449,892 + HMPREF1058_RS11165 0.48 +0.9 449,892 + HMPREF1058_RS11165 0.48 +0.2 449,892 + HMPREF1058_RS11165 0.48 -0.0 449,892 + HMPREF1058_RS11165 0.48 +0.1 449,893 - HMPREF1058_RS11165 0.48 +0.4 449,895 - HMPREF1058_RS11165 0.48 +1.0 449,895 - HMPREF1058_RS11165 0.48 +0.9 449,895 - HMPREF1058_RS11165 0.48 +0.1 449,903 - HMPREF1058_RS11165 0.48 +1.1 450,047 + HMPREF1058_RS11165 0.54 +1.2 450,047 + HMPREF1058_RS11165 0.54 -0.1 450,074 + HMPREF1058_RS11165 0.55 +2.3 450,102 + HMPREF1058_RS11165 0.56 +0.3 450,247 - HMPREF1058_RS11165 0.62 +0.4 450,279 - HMPREF1058_RS11165 0.64 +1.4 450,285 + HMPREF1058_RS11165 0.64 -1.5 450,353 - HMPREF1058_RS11165 0.67 +0.8 450,356 - HMPREF1058_RS11165 0.67 +0.4 450,393 + HMPREF1058_RS11165 0.68 +0.2 450,393 + HMPREF1058_RS11165 0.68 +0.2 450,393 + HMPREF1058_RS11165 0.68 -0.3 450,439 + HMPREF1058_RS11165 0.70 -0.3 450,486 + HMPREF1058_RS11165 0.72 +0.3 450,487 - HMPREF1058_RS11165 0.72 +0.3 450,488 + HMPREF1058_RS11165 0.72 +0.1 450,516 + HMPREF1058_RS11165 0.73 -0.4 450,650 + HMPREF1058_RS11165 0.79 +0.7 450,751 - HMPREF1058_RS11165 0.83 +0.3 450,753 + HMPREF1058_RS11165 0.83 -0.0 450,754 - HMPREF1058_RS11165 0.83 +0.4 450,754 - HMPREF1058_RS11165 0.83 +0.6 450,785 - HMPREF1058_RS11165 0.85 +0.5 450,785 - HMPREF1058_RS11165 0.85 +0.7 450,796 + HMPREF1058_RS11165 0.85 +0.7 450,797 - HMPREF1058_RS11165 0.85 -0.1 450,865 - HMPREF1058_RS11165 0.88 -0.2 451,039 + -0.5 451,039 + +0.4 451,040 - +0.4 451,089 + -0.3 451,090 - +0.2 451,111 + +0.5 451,117 + +0.6 451,120 + +0.2 451,122 + +0.8 451,123 - -0.6 451,142 - +0.8 451,165 - +0.6 451,165 - +0.8 451,166 + +1.7 451,180 - -0.5 451,194 + -0.1 451,195 - -0.3 451,233 + +1.0 451,255 + +0.3 451,327 + +0.5 451,328 - -0.1 451,353 + -1.6 451,390 - -0.1 451,435 - -0.0 451,458 - -0.1 451,486 + -0.3 451,489 + -0.8 451,490 - -0.7 451,490 - +0.1 451,492 - -0.6 451,492 - -0.8 451,497 - -0.1 451,544 + +0.1 451,544 + -0.8 451,545 - -1.1 451,545 - -0.3 451,546 + +0.2 451,552 + +0.0 451,553 - +0.1 451,554 + -0.2 451,701 - HMPREF1058_RS11160 0.26 -0.1 451,715 + HMPREF1058_RS11160 0.29 -0.3 451,785 + HMPREF1058_RS11160 0.40 -0.1 451,786 - HMPREF1058_RS11160 0.40 +0.7 451,788 - HMPREF1058_RS11160 0.41 -0.4 451,800 + HMPREF1058_RS11160 0.42 +0.0 451,800 + HMPREF1058_RS11160 0.42 +0.2 451,801 - HMPREF1058_RS11160 0.43 -0.3 451,801 - HMPREF1058_RS11160 0.43 -0.4 451,801 - HMPREF1058_RS11160 0.43 -0.3 451,801 - HMPREF1058_RS11160 0.43 -0.5 451,840 + HMPREF1058_RS11160 0.49 -0.3 451,855 - HMPREF1058_RS11160 0.51 -0.7 451,996 - HMPREF1058_RS11160 0.75 -1.4 451,996 - HMPREF1058_RS11160 0.75 +0.5 452,005 + HMPREF1058_RS11160 0.76 +0.0 452,006 - HMPREF1058_RS11160 0.76 +0.0 452,040 + HMPREF1058_RS11160 0.82 +0.9
Or see this region's nucleotide sequence