Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse17; day1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS10315 and HMPREF1058_RS10310 are separated by 18 nucleotides HMPREF1058_RS10310 and HMPREF1058_RS10305 are separated by 11 nucleotides HMPREF1058_RS10305 and HMPREF1058_RS0119660 are separated by 289 nucleotides
HMPREF1058_RS10315: HMPREF1058_RS10315 - sigma-70 family RNA polymerase sigma factor, at 692,383 to 692,910
_RS10315
HMPREF1058_RS10310: HMPREF1058_RS10310 - hypothetical protein, at 692,929 to 693,360
_RS10310
HMPREF1058_RS10305: HMPREF1058_RS10305 - hypothetical protein, at 693,372 to 693,578
_RS10305
HMPREF1058_RS0119660: HMPREF1058_RS0119660 - DNA cytosine methyltransferase, at 693,868 to 694,671
_RS0119660
Position (kb) 693
694 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 692.431 kb on - strand at 692.463 kb on - strand, within HMPREF1058_RS10315 at 692.489 kb on - strand, within HMPREF1058_RS10315 at 692.489 kb on - strand, within HMPREF1058_RS10315 at 692.489 kb on - strand, within HMPREF1058_RS10315 at 692.514 kb on - strand, within HMPREF1058_RS10315 at 692.518 kb on - strand, within HMPREF1058_RS10315 at 692.520 kb on - strand, within HMPREF1058_RS10315 at 692.589 kb on - strand, within HMPREF1058_RS10315 at 692.609 kb on - strand, within HMPREF1058_RS10315 at 692.640 kb on - strand, within HMPREF1058_RS10315 at 692.644 kb on - strand at 692.743 kb on - strand, within HMPREF1058_RS10315 at 692.826 kb on - strand, within HMPREF1058_RS10315 at 692.828 kb on - strand, within HMPREF1058_RS10315 at 692.847 kb on - strand, within HMPREF1058_RS10315 at 692.869 kb on - strand at 692.896 kb on - strand at 692.907 kb on - strand at 692.907 kb on - strand at 692.929 kb on - strand at 692.945 kb on - strand at 693.019 kb on - strand, within HMPREF1058_RS10310 at 693.025 kb on + strand, within HMPREF1058_RS10310 at 693.072 kb on + strand, within HMPREF1058_RS10310 at 693.073 kb on - strand, within HMPREF1058_RS10310 at 693.073 kb on - strand, within HMPREF1058_RS10310 at 693.073 kb on - strand, within HMPREF1058_RS10310 at 693.199 kb on - strand, within HMPREF1058_RS10310 at 693.207 kb on - strand, within HMPREF1058_RS10310 at 693.262 kb on - strand, within HMPREF1058_RS10310 at 693.264 kb on + strand, within HMPREF1058_RS10310 at 693.280 kb on - strand, within HMPREF1058_RS10310 at 693.372 kb on - strand at 693.378 kb on - strand at 693.385 kb on - strand at 693.391 kb on + strand at 693.431 kb on + strand, within HMPREF1058_RS10305 at 693.493 kb on - strand, within HMPREF1058_RS10305 at 693.507 kb on - strand, within HMPREF1058_RS10305 at 693.581 kb on + strand at 693.581 kb on + strand at 693.584 kb on - strand at 693.613 kb on - strand at 693.615 kb on - strand at 693.693 kb on - strand at 693.693 kb on - strand at 693.693 kb on - strand at 693.809 kb on - strand at 694.019 kb on + strand, within HMPREF1058_RS0119660 at 694.022 kb on + strand, within HMPREF1058_RS0119660 at 694.023 kb on - strand, within HMPREF1058_RS0119660 at 694.023 kb on - strand, within HMPREF1058_RS0119660 at 694.023 kb on - strand, within HMPREF1058_RS0119660 at 694.023 kb on - strand, within HMPREF1058_RS0119660 at 694.038 kb on - strand, within HMPREF1058_RS0119660 at 694.080 kb on - strand, within HMPREF1058_RS0119660 at 694.084 kb on + strand, within HMPREF1058_RS0119660 at 694.085 kb on - strand, within HMPREF1058_RS0119660 at 694.089 kb on + strand, within HMPREF1058_RS0119660 at 694.100 kb on - strand, within HMPREF1058_RS0119660 at 694.127 kb on - strand, within HMPREF1058_RS0119660 at 694.204 kb on - strand, within HMPREF1058_RS0119660 at 694.214 kb on + strand, within HMPREF1058_RS0119660 at 694.236 kb on - strand, within HMPREF1058_RS0119660 at 694.240 kb on - strand, within HMPREF1058_RS0119660 at 694.254 kb on - strand, within HMPREF1058_RS0119660 at 694.261 kb on + strand, within HMPREF1058_RS0119660 at 694.262 kb on - strand, within HMPREF1058_RS0119660 at 694.263 kb on + strand, within HMPREF1058_RS0119660 at 694.264 kb on - strand, within HMPREF1058_RS0119660 at 694.265 kb on + strand, within HMPREF1058_RS0119660 at 694.265 kb on + strand, within HMPREF1058_RS0119660 at 694.266 kb on - strand, within HMPREF1058_RS0119660 at 694.291 kb on - strand, within HMPREF1058_RS0119660 at 694.295 kb on + strand, within HMPREF1058_RS0119660 at 694.295 kb on + strand, within HMPREF1058_RS0119660 at 694.295 kb on + strand, within HMPREF1058_RS0119660 at 694.296 kb on - strand, within HMPREF1058_RS0119660 at 694.296 kb on - strand, within HMPREF1058_RS0119660 at 694.296 kb on - strand, within HMPREF1058_RS0119660 at 694.296 kb on - strand, within HMPREF1058_RS0119660 at 694.298 kb on - strand, within HMPREF1058_RS0119660 at 694.298 kb on - strand, within HMPREF1058_RS0119660 at 694.298 kb on - strand, within HMPREF1058_RS0119660 at 694.298 kb on - strand, within HMPREF1058_RS0119660 at 694.298 kb on - strand, within HMPREF1058_RS0119660 at 694.330 kb on + strand, within HMPREF1058_RS0119660 at 694.379 kb on + strand, within HMPREF1058_RS0119660 at 694.380 kb on - strand, within HMPREF1058_RS0119660 at 694.380 kb on - strand, within HMPREF1058_RS0119660 at 694.380 kb on - strand, within HMPREF1058_RS0119660 at 694.464 kb on + strand, within HMPREF1058_RS0119660 at 694.537 kb on - strand, within HMPREF1058_RS0119660 at 694.537 kb on - strand, within HMPREF1058_RS0119660 at 694.540 kb on - strand, within HMPREF1058_RS0119660
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse17; day1 remove 692,431 - +0.2 692,463 - HMPREF1058_RS10315 0.15 -0.1 692,489 - HMPREF1058_RS10315 0.20 -0.4 692,489 - HMPREF1058_RS10315 0.20 -0.8 692,489 - HMPREF1058_RS10315 0.20 +2.4 692,514 - HMPREF1058_RS10315 0.25 -1.5 692,518 - HMPREF1058_RS10315 0.26 +0.6 692,520 - HMPREF1058_RS10315 0.26 +0.3 692,589 - HMPREF1058_RS10315 0.39 +0.3 692,609 - HMPREF1058_RS10315 0.43 -0.3 692,640 - HMPREF1058_RS10315 0.49 +0.2 692,644 - +0.4 692,743 - HMPREF1058_RS10315 0.68 +0.3 692,826 - HMPREF1058_RS10315 0.84 +0.4 692,828 - HMPREF1058_RS10315 0.84 -0.2 692,847 - HMPREF1058_RS10315 0.88 -0.5 692,869 - +0.2 692,896 - +0.4 692,907 - +0.4 692,907 - -0.5 692,929 - -0.2 692,945 - -0.9 693,019 - HMPREF1058_RS10310 0.21 -0.1 693,025 + HMPREF1058_RS10310 0.22 -2.9 693,072 + HMPREF1058_RS10310 0.33 -0.2 693,073 - HMPREF1058_RS10310 0.33 -0.1 693,073 - HMPREF1058_RS10310 0.33 -0.3 693,073 - HMPREF1058_RS10310 0.33 -0.6 693,199 - HMPREF1058_RS10310 0.62 +0.4 693,207 - HMPREF1058_RS10310 0.64 +0.0 693,262 - HMPREF1058_RS10310 0.77 -0.0 693,264 + HMPREF1058_RS10310 0.78 -1.2 693,280 - HMPREF1058_RS10310 0.81 -0.0 693,372 - +0.4 693,378 - +0.1 693,385 - +0.5 693,391 + -0.2 693,431 + HMPREF1058_RS10305 0.29 -1.2 693,493 - HMPREF1058_RS10305 0.58 +0.3 693,507 - HMPREF1058_RS10305 0.65 +0.2 693,581 + -2.2 693,581 + -2.7 693,584 - -0.2 693,613 - +0.1 693,615 - +0.2 693,693 - -0.3 693,693 - -0.6 693,693 - -0.8 693,809 - -0.7 694,019 + HMPREF1058_RS0119660 0.19 -3.0 694,022 + HMPREF1058_RS0119660 0.19 -3.2 694,023 - HMPREF1058_RS0119660 0.19 +0.0 694,023 - HMPREF1058_RS0119660 0.19 +0.1 694,023 - HMPREF1058_RS0119660 0.19 -0.6 694,023 - HMPREF1058_RS0119660 0.19 +0.6 694,038 - HMPREF1058_RS0119660 0.21 +1.0 694,080 - HMPREF1058_RS0119660 0.26 +0.1 694,084 + HMPREF1058_RS0119660 0.27 -2.8 694,085 - HMPREF1058_RS0119660 0.27 +0.3 694,089 + HMPREF1058_RS0119660 0.27 -3.0 694,100 - HMPREF1058_RS0119660 0.29 -0.1 694,127 - HMPREF1058_RS0119660 0.32 +0.1 694,204 - HMPREF1058_RS0119660 0.42 -0.2 694,214 + HMPREF1058_RS0119660 0.43 -0.8 694,236 - HMPREF1058_RS0119660 0.46 -0.3 694,240 - HMPREF1058_RS0119660 0.46 +0.3 694,254 - HMPREF1058_RS0119660 0.48 -0.3 694,261 + HMPREF1058_RS0119660 0.49 -3.0 694,262 - HMPREF1058_RS0119660 0.49 +0.1 694,263 + HMPREF1058_RS0119660 0.49 -1.2 694,264 - HMPREF1058_RS0119660 0.49 -0.1 694,265 + HMPREF1058_RS0119660 0.49 -2.0 694,265 + HMPREF1058_RS0119660 0.49 -2.1 694,266 - HMPREF1058_RS0119660 0.50 +0.2 694,291 - HMPREF1058_RS0119660 0.53 +0.8 694,295 + HMPREF1058_RS0119660 0.53 -2.2 694,295 + HMPREF1058_RS0119660 0.53 -0.2 694,295 + HMPREF1058_RS0119660 0.53 -4.1 694,296 - HMPREF1058_RS0119660 0.53 -0.2 694,296 - HMPREF1058_RS0119660 0.53 -0.5 694,296 - HMPREF1058_RS0119660 0.53 +0.1 694,296 - HMPREF1058_RS0119660 0.53 -1.5 694,298 - HMPREF1058_RS0119660 0.53 -0.2 694,298 - HMPREF1058_RS0119660 0.53 -0.1 694,298 - HMPREF1058_RS0119660 0.53 +0.2 694,298 - HMPREF1058_RS0119660 0.53 +1.3 694,298 - HMPREF1058_RS0119660 0.53 -2.4 694,330 + HMPREF1058_RS0119660 0.57 -1.8 694,379 + HMPREF1058_RS0119660 0.64 -0.8 694,380 - HMPREF1058_RS0119660 0.64 -0.0 694,380 - HMPREF1058_RS0119660 0.64 -0.2 694,380 - HMPREF1058_RS0119660 0.64 +0.7 694,464 + HMPREF1058_RS0119660 0.74 -1.5 694,537 - HMPREF1058_RS0119660 0.83 -0.9 694,537 - HMPREF1058_RS0119660 0.83 +1.0 694,540 - HMPREF1058_RS0119660 0.84 +0.0
Or see this region's nucleotide sequence