Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse17; day1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS06315 and HMPREF1058_RS06310 are separated by 32 nucleotides HMPREF1058_RS06310 and HMPREF1058_RS06305 are separated by 293 nucleotides
HMPREF1058_RS06315: HMPREF1058_RS06315 - hypothetical protein, at 507,378 to 508,274
_RS06315
HMPREF1058_RS06310: HMPREF1058_RS06310 - UDP-glucose 4-epimerase GalE, at 508,307 to 509,341
_RS06310
HMPREF1058_RS06305: HMPREF1058_RS06305 - LruC domain-containing protein, at 509,635 to 511,512
_RS06305
Position (kb) 508
509
510 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 507.358 kb on - strand at 507.397 kb on + strand at 507.423 kb on + strand at 507.423 kb on + strand at 507.489 kb on + strand, within HMPREF1058_RS06315 at 507.489 kb on + strand, within HMPREF1058_RS06315 at 507.489 kb on + strand, within HMPREF1058_RS06315 at 507.489 kb on + strand, within HMPREF1058_RS06315 at 507.490 kb on - strand, within HMPREF1058_RS06315 at 507.490 kb on - strand, within HMPREF1058_RS06315 at 507.490 kb on - strand, within HMPREF1058_RS06315 at 507.490 kb on - strand, within HMPREF1058_RS06315 at 507.490 kb on - strand, within HMPREF1058_RS06315 at 507.490 kb on - strand, within HMPREF1058_RS06315 at 507.532 kb on + strand, within HMPREF1058_RS06315 at 507.579 kb on + strand, within HMPREF1058_RS06315 at 507.580 kb on - strand, within HMPREF1058_RS06315 at 507.603 kb on + strand, within HMPREF1058_RS06315 at 507.603 kb on + strand, within HMPREF1058_RS06315 at 507.769 kb on + strand, within HMPREF1058_RS06315 at 507.769 kb on + strand, within HMPREF1058_RS06315 at 507.769 kb on + strand, within HMPREF1058_RS06315 at 507.772 kb on - strand, within HMPREF1058_RS06315 at 507.773 kb on + strand, within HMPREF1058_RS06315 at 507.773 kb on + strand, within HMPREF1058_RS06315 at 507.774 kb on - strand, within HMPREF1058_RS06315 at 507.809 kb on + strand, within HMPREF1058_RS06315 at 507.810 kb on - strand, within HMPREF1058_RS06315 at 507.841 kb on + strand, within HMPREF1058_RS06315 at 507.872 kb on + strand, within HMPREF1058_RS06315 at 507.873 kb on - strand, within HMPREF1058_RS06315 at 507.928 kb on + strand, within HMPREF1058_RS06315 at 507.929 kb on - strand, within HMPREF1058_RS06315 at 507.937 kb on + strand, within HMPREF1058_RS06315 at 507.954 kb on + strand, within HMPREF1058_RS06315 at 507.972 kb on - strand, within HMPREF1058_RS06315 at 508.014 kb on - strand, within HMPREF1058_RS06315 at 508.014 kb on - strand, within HMPREF1058_RS06315 at 508.072 kb on + strand, within HMPREF1058_RS06315 at 508.072 kb on + strand, within HMPREF1058_RS06315 at 508.073 kb on - strand, within HMPREF1058_RS06315 at 508.104 kb on + strand, within HMPREF1058_RS06315 at 508.105 kb on - strand, within HMPREF1058_RS06315 at 508.121 kb on + strand, within HMPREF1058_RS06315 at 508.133 kb on + strand, within HMPREF1058_RS06315 at 508.211 kb on - strand at 508.236 kb on - strand at 508.240 kb on + strand at 508.299 kb on + strand at 508.299 kb on + strand at 508.365 kb on + strand at 508.365 kb on + strand at 508.366 kb on - strand at 508.435 kb on - strand, within HMPREF1058_RS06310 at 508.441 kb on + strand, within HMPREF1058_RS06310 at 508.522 kb on + strand, within HMPREF1058_RS06310 at 508.601 kb on + strand, within HMPREF1058_RS06310 at 508.690 kb on + strand, within HMPREF1058_RS06310 at 508.698 kb on - strand, within HMPREF1058_RS06310 at 508.831 kb on + strand, within HMPREF1058_RS06310 at 508.834 kb on + strand, within HMPREF1058_RS06310 at 508.835 kb on - strand, within HMPREF1058_RS06310 at 508.856 kb on - strand, within HMPREF1058_RS06310 at 508.878 kb on + strand, within HMPREF1058_RS06310 at 508.922 kb on + strand, within HMPREF1058_RS06310 at 508.922 kb on + strand, within HMPREF1058_RS06310 at 508.922 kb on + strand, within HMPREF1058_RS06310 at 508.923 kb on - strand, within HMPREF1058_RS06310 at 508.946 kb on - strand, within HMPREF1058_RS06310 at 508.979 kb on + strand, within HMPREF1058_RS06310 at 508.979 kb on + strand, within HMPREF1058_RS06310 at 508.980 kb on - strand, within HMPREF1058_RS06310 at 509.014 kb on + strand, within HMPREF1058_RS06310 at 509.014 kb on + strand, within HMPREF1058_RS06310 at 509.015 kb on - strand, within HMPREF1058_RS06310 at 509.016 kb on + strand, within HMPREF1058_RS06310 at 509.016 kb on + strand, within HMPREF1058_RS06310 at 509.016 kb on + strand, within HMPREF1058_RS06310 at 509.017 kb on - strand, within HMPREF1058_RS06310 at 509.017 kb on - strand, within HMPREF1058_RS06310 at 509.018 kb on + strand, within HMPREF1058_RS06310 at 509.018 kb on + strand, within HMPREF1058_RS06310 at 509.018 kb on + strand, within HMPREF1058_RS06310 at 509.019 kb on - strand, within HMPREF1058_RS06310 at 509.023 kb on - strand, within HMPREF1058_RS06310 at 509.290 kb on - strand at 509.319 kb on + strand at 509.340 kb on - strand at 509.438 kb on - strand at 509.455 kb on + strand at 509.455 kb on + strand at 509.455 kb on + strand at 509.455 kb on + strand at 509.455 kb on + strand at 509.455 kb on + strand at 509.455 kb on + strand at 509.456 kb on - strand at 509.456 kb on - strand at 509.496 kb on + strand at 509.497 kb on - strand at 509.574 kb on + strand at 509.578 kb on + strand at 509.606 kb on - strand at 509.619 kb on - strand at 509.629 kb on + strand at 509.694 kb on + strand at 509.695 kb on - strand at 509.695 kb on - strand at 509.703 kb on + strand at 509.703 kb on + strand at 509.703 kb on + strand at 509.705 kb on + strand at 509.705 kb on + strand at 509.706 kb on - strand at 509.706 kb on - strand at 509.706 kb on - strand at 509.706 kb on - strand at 509.706 kb on - strand at 509.707 kb on + strand at 509.708 kb on - strand at 509.708 kb on - strand at 509.708 kb on - strand at 509.790 kb on + strand at 509.791 kb on - strand at 509.855 kb on + strand, within HMPREF1058_RS06305 at 509.883 kb on + strand, within HMPREF1058_RS06305 at 509.885 kb on + strand, within HMPREF1058_RS06305 at 509.885 kb on + strand, within HMPREF1058_RS06305 at 509.885 kb on + strand, within HMPREF1058_RS06305 at 509.896 kb on + strand, within HMPREF1058_RS06305 at 509.996 kb on + strand, within HMPREF1058_RS06305 at 510.043 kb on + strand, within HMPREF1058_RS06305 at 510.044 kb on - strand, within HMPREF1058_RS06305 at 510.052 kb on + strand, within HMPREF1058_RS06305 at 510.053 kb on - strand, within HMPREF1058_RS06305 at 510.054 kb on + strand, within HMPREF1058_RS06305 at 510.231 kb on + strand, within HMPREF1058_RS06305 at 510.231 kb on + strand, within HMPREF1058_RS06305 at 510.233 kb on + strand, within HMPREF1058_RS06305 at 510.233 kb on + strand, within HMPREF1058_RS06305 at 510.234 kb on - strand, within HMPREF1058_RS06305 at 510.244 kb on - strand, within HMPREF1058_RS06305 at 510.244 kb on - strand, within HMPREF1058_RS06305 at 510.244 kb on - strand, within HMPREF1058_RS06305 at 510.275 kb on + strand, within HMPREF1058_RS06305 at 510.276 kb on - strand, within HMPREF1058_RS06305 at 510.302 kb on + strand, within HMPREF1058_RS06305 at 510.303 kb on - strand, within HMPREF1058_RS06305
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse17; day1 remove 507,358 - -3.8 507,397 + +0.0 507,423 + +0.0 507,423 + -1.7 507,489 + HMPREF1058_RS06315 0.12 +0.6 507,489 + HMPREF1058_RS06315 0.12 -0.2 507,489 + HMPREF1058_RS06315 0.12 +0.0 507,489 + HMPREF1058_RS06315 0.12 -0.2 507,490 - HMPREF1058_RS06315 0.12 -3.1 507,490 - HMPREF1058_RS06315 0.12 -2.0 507,490 - HMPREF1058_RS06315 0.12 -3.1 507,490 - HMPREF1058_RS06315 0.12 -2.0 507,490 - HMPREF1058_RS06315 0.12 -1.5 507,490 - HMPREF1058_RS06315 0.12 -2.8 507,532 + HMPREF1058_RS06315 0.17 -1.3 507,579 + HMPREF1058_RS06315 0.22 +0.0 507,580 - HMPREF1058_RS06315 0.23 -3.7 507,603 + HMPREF1058_RS06315 0.25 +0.3 507,603 + HMPREF1058_RS06315 0.25 +0.4 507,769 + HMPREF1058_RS06315 0.44 -0.3 507,769 + HMPREF1058_RS06315 0.44 -0.7 507,769 + HMPREF1058_RS06315 0.44 -0.5 507,772 - HMPREF1058_RS06315 0.44 -3.4 507,773 + HMPREF1058_RS06315 0.44 +0.7 507,773 + HMPREF1058_RS06315 0.44 -0.8 507,774 - HMPREF1058_RS06315 0.44 -2.3 507,809 + HMPREF1058_RS06315 0.48 +0.0 507,810 - HMPREF1058_RS06315 0.48 -2.3 507,841 + HMPREF1058_RS06315 0.52 +0.3 507,872 + HMPREF1058_RS06315 0.55 +0.0 507,873 - HMPREF1058_RS06315 0.55 -2.8 507,928 + HMPREF1058_RS06315 0.61 +2.0 507,929 - HMPREF1058_RS06315 0.61 -4.0 507,937 + HMPREF1058_RS06315 0.62 -1.4 507,954 + HMPREF1058_RS06315 0.64 -1.2 507,972 - HMPREF1058_RS06315 0.66 -1.0 508,014 - HMPREF1058_RS06315 0.71 -3.1 508,014 - HMPREF1058_RS06315 0.71 -2.0 508,072 + HMPREF1058_RS06315 0.77 +0.0 508,072 + HMPREF1058_RS06315 0.77 +0.3 508,073 - HMPREF1058_RS06315 0.77 -2.3 508,104 + HMPREF1058_RS06315 0.81 -1.5 508,105 - HMPREF1058_RS06315 0.81 -1.5 508,121 + HMPREF1058_RS06315 0.83 +0.1 508,133 + HMPREF1058_RS06315 0.84 -0.2 508,211 - -3.1 508,236 - -3.3 508,240 + -0.4 508,299 + -4.8 508,299 + -4.3 508,365 + -4.1 508,365 + -2.5 508,366 - -2.3 508,435 - HMPREF1058_RS06310 0.12 -1.0 508,441 + HMPREF1058_RS06310 0.13 -5.0 508,522 + HMPREF1058_RS06310 0.21 -4.0 508,601 + HMPREF1058_RS06310 0.28 -4.1 508,690 + HMPREF1058_RS06310 0.37 -2.3 508,698 - HMPREF1058_RS06310 0.38 -3.1 508,831 + HMPREF1058_RS06310 0.51 -5.2 508,834 + HMPREF1058_RS06310 0.51 -5.4 508,835 - HMPREF1058_RS06310 0.51 -3.5 508,856 - HMPREF1058_RS06310 0.53 -1.0 508,878 + HMPREF1058_RS06310 0.55 -3.3 508,922 + HMPREF1058_RS06310 0.59 -3.1 508,922 + HMPREF1058_RS06310 0.59 -3.1 508,922 + HMPREF1058_RS06310 0.59 -4.0 508,923 - HMPREF1058_RS06310 0.60 -2.0 508,946 - HMPREF1058_RS06310 0.62 -2.5 508,979 + HMPREF1058_RS06310 0.65 -3.1 508,979 + HMPREF1058_RS06310 0.65 -3.0 508,980 - HMPREF1058_RS06310 0.65 +0.0 509,014 + HMPREF1058_RS06310 0.68 -2.5 509,014 + HMPREF1058_RS06310 0.68 -4.6 509,015 - HMPREF1058_RS06310 0.68 -3.1 509,016 + HMPREF1058_RS06310 0.69 -2.0 509,016 + HMPREF1058_RS06310 0.69 -3.3 509,016 + HMPREF1058_RS06310 0.69 -4.0 509,017 - HMPREF1058_RS06310 0.69 -3.7 509,017 - HMPREF1058_RS06310 0.69 -3.1 509,018 + HMPREF1058_RS06310 0.69 -3.0 509,018 + HMPREF1058_RS06310 0.69 -3.3 509,018 + HMPREF1058_RS06310 0.69 -3.8 509,019 - HMPREF1058_RS06310 0.69 -4.0 509,023 - HMPREF1058_RS06310 0.69 +0.0 509,290 - -2.8 509,319 + -0.5 509,340 - +0.6 509,438 - -0.5 509,455 + +0.2 509,455 + +0.1 509,455 + -0.0 509,455 + +0.4 509,455 + +0.3 509,455 + -0.3 509,455 + -0.5 509,456 - -0.6 509,456 - -0.3 509,496 + -0.0 509,497 - +0.2 509,574 + +0.2 509,578 + +0.5 509,606 - +0.2 509,619 - -0.1 509,629 + +0.1 509,694 + +0.4 509,695 - -0.1 509,695 - +0.5 509,703 + +0.3 509,703 + +0.1 509,703 + +0.0 509,705 + +0.6 509,705 + +0.4 509,706 - +0.6 509,706 - +0.1 509,706 - +0.6 509,706 - +0.1 509,706 - +0.6 509,707 + +0.0 509,708 - +0.5 509,708 - +0.3 509,708 - -0.4 509,790 + +0.5 509,791 - +0.8 509,855 + HMPREF1058_RS06305 0.12 -0.1 509,883 + HMPREF1058_RS06305 0.13 +0.3 509,885 + HMPREF1058_RS06305 0.13 +0.7 509,885 + HMPREF1058_RS06305 0.13 -0.2 509,885 + HMPREF1058_RS06305 0.13 +0.1 509,896 + HMPREF1058_RS06305 0.14 -0.1 509,996 + HMPREF1058_RS06305 0.19 -0.4 510,043 + HMPREF1058_RS06305 0.22 -0.8 510,044 - HMPREF1058_RS06305 0.22 +0.4 510,052 + HMPREF1058_RS06305 0.22 +0.2 510,053 - HMPREF1058_RS06305 0.22 +0.4 510,054 + HMPREF1058_RS06305 0.22 -0.7 510,231 + HMPREF1058_RS06305 0.32 +0.0 510,231 + HMPREF1058_RS06305 0.32 +1.3 510,233 + HMPREF1058_RS06305 0.32 +1.5 510,233 + HMPREF1058_RS06305 0.32 +0.2 510,234 - HMPREF1058_RS06305 0.32 -0.8 510,244 - HMPREF1058_RS06305 0.32 +0.3 510,244 - HMPREF1058_RS06305 0.32 +1.0 510,244 - HMPREF1058_RS06305 0.32 +0.7 510,275 + HMPREF1058_RS06305 0.34 -0.4 510,276 - HMPREF1058_RS06305 0.34 -0.2 510,302 + HMPREF1058_RS06305 0.36 +0.1 510,303 - HMPREF1058_RS06305 0.36 +0.4
Or see this region's nucleotide sequence