Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse16; day1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS16690 and HMPREF1058_RS16685 are separated by 194 nucleotides HMPREF1058_RS16685 and HMPREF1058_RS16680 are separated by 37 nucleotides HMPREF1058_RS16680 and HMPREF1058_RS16675 overlap by 1 nucleotides
HMPREF1058_RS16690: HMPREF1058_RS16690 - NTP transferase domain-containing protein, at 616,067 to 616,912
_RS16690
HMPREF1058_RS16685: HMPREF1058_RS16685 - methionine synthase, at 617,107 to 619,860
_RS16685
HMPREF1058_RS16680: HMPREF1058_RS16680 - SsrA-binding protein, at 619,898 to 620,350
_RS16680
HMPREF1058_RS16675: HMPREF1058_RS16675 - DUF1282 family protein, at 620,350 to 620,919
_RS16675
Position (kb) 617
618
619
620 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 616.109 kb on - strand at 616.212 kb on + strand, within HMPREF1058_RS16690 at 616.212 kb on + strand, within HMPREF1058_RS16690 at 616.354 kb on - strand, within HMPREF1058_RS16690 at 616.372 kb on + strand, within HMPREF1058_RS16690 at 616.373 kb on - strand, within HMPREF1058_RS16690 at 616.487 kb on + strand, within HMPREF1058_RS16690 at 616.487 kb on + strand, within HMPREF1058_RS16690 at 616.503 kb on + strand, within HMPREF1058_RS16690 at 616.504 kb on - strand, within HMPREF1058_RS16690 at 616.504 kb on - strand, within HMPREF1058_RS16690 at 616.544 kb on + strand, within HMPREF1058_RS16690 at 616.556 kb on - strand, within HMPREF1058_RS16690 at 616.619 kb on - strand, within HMPREF1058_RS16690 at 616.635 kb on + strand, within HMPREF1058_RS16690 at 616.690 kb on + strand, within HMPREF1058_RS16690 at 616.712 kb on + strand, within HMPREF1058_RS16690 at 616.712 kb on + strand, within HMPREF1058_RS16690 at 616.776 kb on - strand, within HMPREF1058_RS16690 at 616.829 kb on + strand at 616.829 kb on + strand at 616.830 kb on - strand at 616.928 kb on + strand at 616.928 kb on + strand at 616.962 kb on - strand at 617.057 kb on - strand at 617.086 kb on - strand at 617.198 kb on + strand at 617.320 kb on + strand at 617.335 kb on - strand at 617.335 kb on - strand at 617.338 kb on + strand at 617.339 kb on - strand at 617.458 kb on + strand, within HMPREF1058_RS16685 at 617.459 kb on - strand, within HMPREF1058_RS16685 at 617.461 kb on - strand, within HMPREF1058_RS16685 at 617.479 kb on - strand, within HMPREF1058_RS16685 at 617.492 kb on - strand, within HMPREF1058_RS16685 at 617.525 kb on - strand, within HMPREF1058_RS16685 at 617.525 kb on - strand, within HMPREF1058_RS16685 at 617.527 kb on - strand, within HMPREF1058_RS16685 at 617.527 kb on - strand, within HMPREF1058_RS16685 at 617.535 kb on - strand, within HMPREF1058_RS16685 at 617.612 kb on - strand, within HMPREF1058_RS16685 at 617.760 kb on + strand, within HMPREF1058_RS16685 at 617.761 kb on - strand, within HMPREF1058_RS16685 at 617.761 kb on - strand, within HMPREF1058_RS16685 at 617.804 kb on + strand, within HMPREF1058_RS16685 at 617.857 kb on + strand, within HMPREF1058_RS16685 at 618.139 kb on - strand, within HMPREF1058_RS16685 at 618.140 kb on + strand, within HMPREF1058_RS16685 at 618.140 kb on + strand, within HMPREF1058_RS16685 at 618.252 kb on + strand, within HMPREF1058_RS16685 at 618.253 kb on - strand, within HMPREF1058_RS16685 at 618.253 kb on - strand, within HMPREF1058_RS16685 at 618.286 kb on + strand, within HMPREF1058_RS16685 at 618.419 kb on - strand, within HMPREF1058_RS16685 at 618.466 kb on + strand, within HMPREF1058_RS16685 at 618.574 kb on + strand, within HMPREF1058_RS16685 at 618.575 kb on - strand, within HMPREF1058_RS16685 at 618.575 kb on - strand, within HMPREF1058_RS16685 at 618.583 kb on + strand, within HMPREF1058_RS16685 at 618.584 kb on - strand, within HMPREF1058_RS16685 at 618.619 kb on - strand, within HMPREF1058_RS16685 at 618.785 kb on - strand, within HMPREF1058_RS16685 at 618.921 kb on + strand, within HMPREF1058_RS16685 at 618.922 kb on - strand, within HMPREF1058_RS16685 at 618.923 kb on + strand, within HMPREF1058_RS16685 at 618.924 kb on - strand, within HMPREF1058_RS16685 at 618.936 kb on + strand, within HMPREF1058_RS16685 at 618.981 kb on - strand, within HMPREF1058_RS16685 at 618.981 kb on - strand, within HMPREF1058_RS16685 at 619.022 kb on + strand, within HMPREF1058_RS16685 at 619.022 kb on + strand, within HMPREF1058_RS16685 at 619.067 kb on - strand, within HMPREF1058_RS16685 at 619.067 kb on - strand, within HMPREF1058_RS16685 at 619.068 kb on + strand, within HMPREF1058_RS16685 at 619.068 kb on + strand, within HMPREF1058_RS16685 at 619.069 kb on - strand, within HMPREF1058_RS16685 at 619.070 kb on + strand, within HMPREF1058_RS16685 at 619.070 kb on + strand, within HMPREF1058_RS16685 at 619.293 kb on - strand, within HMPREF1058_RS16685 at 619.293 kb on - strand, within HMPREF1058_RS16685 at 619.406 kb on + strand, within HMPREF1058_RS16685 at 619.468 kb on - strand, within HMPREF1058_RS16685 at 619.500 kb on + strand, within HMPREF1058_RS16685 at 619.518 kb on + strand, within HMPREF1058_RS16685 at 619.521 kb on - strand, within HMPREF1058_RS16685 at 619.627 kb on - strand at 619.639 kb on - strand at 619.641 kb on + strand at 619.641 kb on + strand at 619.642 kb on - strand at 619.661 kb on + strand at 619.661 kb on + strand at 619.666 kb on - strand at 619.783 kb on - strand at 619.783 kb on - strand at 619.840 kb on + strand at 619.860 kb on + strand at 619.860 kb on + strand at 619.860 kb on + strand at 619.861 kb on - strand at 619.861 kb on - strand at 619.861 kb on - strand at 619.861 kb on - strand at 619.899 kb on + strand at 619.912 kb on + strand at 619.912 kb on + strand at 619.912 kb on + strand at 619.912 kb on + strand at 620.436 kb on - strand, within HMPREF1058_RS16675 at 620.473 kb on - strand, within HMPREF1058_RS16675 at 620.591 kb on - strand, within HMPREF1058_RS16675 at 620.591 kb on - strand, within HMPREF1058_RS16675 at 620.606 kb on - strand, within HMPREF1058_RS16675 at 620.661 kb on - strand, within HMPREF1058_RS16675 at 620.693 kb on - strand, within HMPREF1058_RS16675 at 620.701 kb on - strand, within HMPREF1058_RS16675 at 620.701 kb on - strand, within HMPREF1058_RS16675 at 620.701 kb on - strand, within HMPREF1058_RS16675 at 620.764 kb on - strand, within HMPREF1058_RS16675 at 620.764 kb on - strand, within HMPREF1058_RS16675 at 620.768 kb on - strand, within HMPREF1058_RS16675 at 620.795 kb on - strand, within HMPREF1058_RS16675 at 620.795 kb on - strand, within HMPREF1058_RS16675
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse16; day1 remove 616,109 - -0.4 616,212 + HMPREF1058_RS16690 0.17 -0.2 616,212 + HMPREF1058_RS16690 0.17 -0.6 616,354 - HMPREF1058_RS16690 0.34 +0.3 616,372 + HMPREF1058_RS16690 0.36 +0.2 616,373 - HMPREF1058_RS16690 0.36 +1.4 616,487 + HMPREF1058_RS16690 0.50 +1.4 616,487 + HMPREF1058_RS16690 0.50 -0.5 616,503 + HMPREF1058_RS16690 0.52 +0.6 616,504 - HMPREF1058_RS16690 0.52 -0.4 616,504 - HMPREF1058_RS16690 0.52 +0.1 616,544 + HMPREF1058_RS16690 0.56 -0.7 616,556 - HMPREF1058_RS16690 0.58 +0.3 616,619 - HMPREF1058_RS16690 0.65 +0.2 616,635 + HMPREF1058_RS16690 0.67 +0.4 616,690 + HMPREF1058_RS16690 0.74 -0.0 616,712 + HMPREF1058_RS16690 0.76 -0.8 616,712 + HMPREF1058_RS16690 0.76 -0.3 616,776 - HMPREF1058_RS16690 0.84 -0.6 616,829 + +0.6 616,829 + +0.5 616,830 - -1.3 616,928 + -0.3 616,928 + +0.8 616,962 - +0.1 617,057 - +0.5 617,086 - -0.3 617,198 + -0.8 617,320 + -1.5 617,335 - -2.4 617,335 - -1.2 617,338 + -1.9 617,339 - -2.6 617,458 + HMPREF1058_RS16685 0.13 -1.5 617,459 - HMPREF1058_RS16685 0.13 -0.9 617,461 - HMPREF1058_RS16685 0.13 -1.6 617,479 - HMPREF1058_RS16685 0.14 -0.7 617,492 - HMPREF1058_RS16685 0.14 -1.7 617,525 - HMPREF1058_RS16685 0.15 -1.3 617,525 - HMPREF1058_RS16685 0.15 -0.7 617,527 - HMPREF1058_RS16685 0.15 -1.6 617,527 - HMPREF1058_RS16685 0.15 +0.1 617,535 - HMPREF1058_RS16685 0.16 -1.1 617,612 - HMPREF1058_RS16685 0.18 -1.1 617,760 + HMPREF1058_RS16685 0.24 -1.7 617,761 - HMPREF1058_RS16685 0.24 -1.4 617,761 - HMPREF1058_RS16685 0.24 -1.6 617,804 + HMPREF1058_RS16685 0.25 -1.3 617,857 + HMPREF1058_RS16685 0.27 -1.5 618,139 - HMPREF1058_RS16685 0.37 -0.9 618,140 + HMPREF1058_RS16685 0.38 -1.7 618,140 + HMPREF1058_RS16685 0.38 -2.0 618,252 + HMPREF1058_RS16685 0.42 +2.4 618,253 - HMPREF1058_RS16685 0.42 -0.7 618,253 - HMPREF1058_RS16685 0.42 -0.5 618,286 + HMPREF1058_RS16685 0.43 -1.5 618,419 - HMPREF1058_RS16685 0.48 -3.0 618,466 + HMPREF1058_RS16685 0.49 -0.7 618,574 + HMPREF1058_RS16685 0.53 -1.6 618,575 - HMPREF1058_RS16685 0.53 -1.7 618,575 - HMPREF1058_RS16685 0.53 -2.0 618,583 + HMPREF1058_RS16685 0.54 -2.4 618,584 - HMPREF1058_RS16685 0.54 -1.4 618,619 - HMPREF1058_RS16685 0.55 -1.5 618,785 - HMPREF1058_RS16685 0.61 -0.8 618,921 + HMPREF1058_RS16685 0.66 -0.7 618,922 - HMPREF1058_RS16685 0.66 -2.0 618,923 + HMPREF1058_RS16685 0.66 -1.3 618,924 - HMPREF1058_RS16685 0.66 -0.7 618,936 + HMPREF1058_RS16685 0.66 -1.9 618,981 - HMPREF1058_RS16685 0.68 -2.3 618,981 - HMPREF1058_RS16685 0.68 -1.3 619,022 + HMPREF1058_RS16685 0.70 -1.3 619,022 + HMPREF1058_RS16685 0.70 -1.4 619,067 - HMPREF1058_RS16685 0.71 -1.3 619,067 - HMPREF1058_RS16685 0.71 -1.4 619,068 + HMPREF1058_RS16685 0.71 -2.3 619,068 + HMPREF1058_RS16685 0.71 -1.0 619,069 - HMPREF1058_RS16685 0.71 -0.9 619,070 + HMPREF1058_RS16685 0.71 -1.8 619,070 + HMPREF1058_RS16685 0.71 -2.2 619,293 - HMPREF1058_RS16685 0.79 -1.7 619,293 - HMPREF1058_RS16685 0.79 -2.7 619,406 + HMPREF1058_RS16685 0.83 -0.5 619,468 - HMPREF1058_RS16685 0.86 -1.2 619,500 + HMPREF1058_RS16685 0.87 -2.0 619,518 + HMPREF1058_RS16685 0.88 -0.3 619,521 - HMPREF1058_RS16685 0.88 -3.0 619,627 - -1.3 619,639 - -0.9 619,641 + -1.3 619,641 + -1.2 619,642 - -0.4 619,661 + -1.9 619,661 + -0.5 619,666 - -2.9 619,783 - -1.3 619,783 - +0.1 619,840 + -2.7 619,860 + -1.3 619,860 + -1.6 619,860 + -2.3 619,861 - -0.9 619,861 - -1.0 619,861 - -0.7 619,861 - +0.2 619,899 + -0.8 619,912 + -1.4 619,912 + -1.6 619,912 + -2.9 619,912 + -1.5 620,436 - HMPREF1058_RS16675 0.15 +0.1 620,473 - HMPREF1058_RS16675 0.22 +0.3 620,591 - HMPREF1058_RS16675 0.42 -0.2 620,591 - HMPREF1058_RS16675 0.42 +1.1 620,606 - HMPREF1058_RS16675 0.45 +0.2 620,661 - HMPREF1058_RS16675 0.55 +0.0 620,693 - HMPREF1058_RS16675 0.60 -1.5 620,701 - HMPREF1058_RS16675 0.62 -0.2 620,701 - HMPREF1058_RS16675 0.62 -0.1 620,701 - HMPREF1058_RS16675 0.62 +0.4 620,764 - HMPREF1058_RS16675 0.73 +0.1 620,764 - HMPREF1058_RS16675 0.73 +0.5 620,768 - HMPREF1058_RS16675 0.73 +1.2 620,795 - HMPREF1058_RS16675 0.78 -0.1 620,795 - HMPREF1058_RS16675 0.78 -0.2
Or see this region's nucleotide sequence