Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse16; day1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS15445 and HMPREF1058_RS15440 are separated by 61 nucleotides HMPREF1058_RS15440 and HMPREF1058_RS15435 overlap by 9 nucleotides HMPREF1058_RS15435 and HMPREF1058_RS15430 are separated by 125 nucleotides
HMPREF1058_RS15445: HMPREF1058_RS15445 - DUF418 domain-containing protein, at 919,445 to 920,629
_RS15445
HMPREF1058_RS15440: HMPREF1058_RS15440 - tetratricopeptide repeat protein, at 920,691 to 922,868
_RS15440
HMPREF1058_RS15435: HMPREF1058_RS15435 - hypothetical protein, at 922,860 to 923,681
_RS15435
HMPREF1058_RS15430: HMPREF1058_RS15430 - aspartate-alanine antiporter, at 923,807 to 925,507
_RS15430
Position (kb) 920
921
922
923 Strain fitness (log2 ratio) -2
-1
0
1
2 at 919.786 kb on + strand, within HMPREF1058_RS15445 at 919.786 kb on + strand, within HMPREF1058_RS15445 at 919.787 kb on - strand, within HMPREF1058_RS15445 at 919.789 kb on + strand, within HMPREF1058_RS15445 at 919.837 kb on - strand, within HMPREF1058_RS15445 at 919.839 kb on + strand, within HMPREF1058_RS15445 at 919.885 kb on - strand, within HMPREF1058_RS15445 at 919.931 kb on + strand, within HMPREF1058_RS15445 at 919.935 kb on + strand, within HMPREF1058_RS15445 at 919.935 kb on + strand, within HMPREF1058_RS15445 at 919.936 kb on - strand, within HMPREF1058_RS15445 at 919.936 kb on - strand, within HMPREF1058_RS15445 at 919.936 kb on - strand, within HMPREF1058_RS15445 at 920.185 kb on - strand, within HMPREF1058_RS15445 at 920.197 kb on - strand, within HMPREF1058_RS15445 at 920.229 kb on + strand, within HMPREF1058_RS15445 at 920.245 kb on + strand, within HMPREF1058_RS15445 at 920.245 kb on + strand, within HMPREF1058_RS15445 at 920.269 kb on + strand, within HMPREF1058_RS15445 at 920.389 kb on - strand, within HMPREF1058_RS15445 at 920.432 kb on - strand at 920.444 kb on - strand, within HMPREF1058_RS15445 at 920.445 kb on + strand, within HMPREF1058_RS15445 at 920.448 kb on + strand, within HMPREF1058_RS15445 at 920.449 kb on - strand, within HMPREF1058_RS15445 at 920.462 kb on + strand, within HMPREF1058_RS15445 at 920.463 kb on - strand, within HMPREF1058_RS15445 at 920.463 kb on - strand, within HMPREF1058_RS15445 at 920.598 kb on - strand at 920.677 kb on + strand at 920.677 kb on + strand at 920.685 kb on + strand at 920.789 kb on - strand at 920.838 kb on + strand at 920.905 kb on - strand at 920.930 kb on - strand, within HMPREF1058_RS15440 at 920.964 kb on + strand, within HMPREF1058_RS15440 at 921.006 kb on + strand, within HMPREF1058_RS15440 at 921.067 kb on + strand, within HMPREF1058_RS15440 at 921.069 kb on + strand, within HMPREF1058_RS15440 at 921.072 kb on - strand, within HMPREF1058_RS15440 at 921.142 kb on + strand, within HMPREF1058_RS15440 at 921.187 kb on - strand, within HMPREF1058_RS15440 at 921.218 kb on - strand, within HMPREF1058_RS15440 at 921.307 kb on + strand, within HMPREF1058_RS15440 at 921.318 kb on + strand, within HMPREF1058_RS15440 at 921.319 kb on - strand, within HMPREF1058_RS15440 at 921.353 kb on + strand, within HMPREF1058_RS15440 at 921.378 kb on + strand, within HMPREF1058_RS15440 at 921.379 kb on - strand, within HMPREF1058_RS15440 at 921.381 kb on + strand, within HMPREF1058_RS15440 at 921.382 kb on - strand, within HMPREF1058_RS15440 at 921.668 kb on - strand, within HMPREF1058_RS15440 at 921.699 kb on + strand, within HMPREF1058_RS15440 at 921.699 kb on + strand, within HMPREF1058_RS15440 at 921.699 kb on + strand, within HMPREF1058_RS15440 at 921.699 kb on + strand, within HMPREF1058_RS15440 at 921.699 kb on + strand, within HMPREF1058_RS15440 at 921.700 kb on - strand, within HMPREF1058_RS15440 at 921.702 kb on - strand, within HMPREF1058_RS15440 at 921.859 kb on + strand, within HMPREF1058_RS15440 at 922.035 kb on + strand, within HMPREF1058_RS15440 at 922.036 kb on - strand, within HMPREF1058_RS15440 at 922.088 kb on - strand, within HMPREF1058_RS15440 at 922.088 kb on - strand, within HMPREF1058_RS15440 at 922.118 kb on - strand, within HMPREF1058_RS15440 at 922.150 kb on + strand, within HMPREF1058_RS15440 at 922.161 kb on + strand, within HMPREF1058_RS15440 at 922.183 kb on - strand, within HMPREF1058_RS15440 at 922.183 kb on - strand, within HMPREF1058_RS15440 at 922.183 kb on - strand, within HMPREF1058_RS15440 at 922.186 kb on + strand, within HMPREF1058_RS15440 at 922.267 kb on + strand, within HMPREF1058_RS15440 at 922.322 kb on - strand, within HMPREF1058_RS15440 at 922.361 kb on + strand, within HMPREF1058_RS15440 at 922.362 kb on - strand, within HMPREF1058_RS15440 at 922.395 kb on - strand, within HMPREF1058_RS15440 at 922.431 kb on + strand, within HMPREF1058_RS15440 at 922.478 kb on - strand, within HMPREF1058_RS15440 at 922.483 kb on + strand, within HMPREF1058_RS15440 at 922.531 kb on - strand, within HMPREF1058_RS15440 at 922.698 kb on + strand at 922.698 kb on + strand at 922.699 kb on - strand at 922.701 kb on + strand at 922.702 kb on - strand at 922.734 kb on + strand at 922.734 kb on + strand at 922.734 kb on + strand at 922.735 kb on - strand at 922.735 kb on - strand at 922.757 kb on - strand at 922.813 kb on + strand at 922.834 kb on + strand at 922.834 kb on + strand at 922.835 kb on - strand at 922.844 kb on + strand at 922.845 kb on - strand at 922.874 kb on + strand at 922.876 kb on + strand at 922.877 kb on - strand at 922.877 kb on - strand at 922.881 kb on + strand at 922.881 kb on + strand at 922.973 kb on + strand, within HMPREF1058_RS15435 at 922.974 kb on - strand, within HMPREF1058_RS15435 at 922.974 kb on - strand, within HMPREF1058_RS15435 at 922.975 kb on + strand, within HMPREF1058_RS15435 at 922.976 kb on - strand, within HMPREF1058_RS15435 at 922.998 kb on - strand, within HMPREF1058_RS15435 at 922.998 kb on - strand, within HMPREF1058_RS15435 at 922.998 kb on - strand, within HMPREF1058_RS15435 at 923.019 kb on + strand, within HMPREF1058_RS15435 at 923.099 kb on - strand, within HMPREF1058_RS15435 at 923.144 kb on - strand, within HMPREF1058_RS15435 at 923.148 kb on - strand, within HMPREF1058_RS15435 at 923.152 kb on + strand, within HMPREF1058_RS15435 at 923.157 kb on - strand, within HMPREF1058_RS15435 at 923.174 kb on + strand, within HMPREF1058_RS15435 at 923.174 kb on + strand, within HMPREF1058_RS15435 at 923.175 kb on - strand, within HMPREF1058_RS15435 at 923.247 kb on + strand, within HMPREF1058_RS15435 at 923.436 kb on - strand, within HMPREF1058_RS15435 at 923.436 kb on - strand, within HMPREF1058_RS15435 at 923.473 kb on - strand, within HMPREF1058_RS15435 at 923.489 kb on - strand, within HMPREF1058_RS15435 at 923.594 kb on - strand, within HMPREF1058_RS15435 at 923.644 kb on - strand at 923.691 kb on - strand at 923.691 kb on - strand at 923.691 kb on - strand at 923.791 kb on - strand at 923.791 kb on - strand at 923.820 kb on + strand at 923.821 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse16; day1 remove 919,786 + HMPREF1058_RS15445 0.29 +1.7 919,786 + HMPREF1058_RS15445 0.29 +0.2 919,787 - HMPREF1058_RS15445 0.29 +0.3 919,789 + HMPREF1058_RS15445 0.29 +0.0 919,837 - HMPREF1058_RS15445 0.33 -0.0 919,839 + HMPREF1058_RS15445 0.33 -0.1 919,885 - HMPREF1058_RS15445 0.37 +0.4 919,931 + HMPREF1058_RS15445 0.41 +0.5 919,935 + HMPREF1058_RS15445 0.41 -0.4 919,935 + HMPREF1058_RS15445 0.41 +0.2 919,936 - HMPREF1058_RS15445 0.41 +0.8 919,936 - HMPREF1058_RS15445 0.41 +0.3 919,936 - HMPREF1058_RS15445 0.41 +0.3 920,185 - HMPREF1058_RS15445 0.62 +0.3 920,197 - HMPREF1058_RS15445 0.63 -0.3 920,229 + HMPREF1058_RS15445 0.66 +0.6 920,245 + HMPREF1058_RS15445 0.68 +0.3 920,245 + HMPREF1058_RS15445 0.68 -1.3 920,269 + HMPREF1058_RS15445 0.70 +0.2 920,389 - HMPREF1058_RS15445 0.80 +0.1 920,432 - -0.4 920,444 - HMPREF1058_RS15445 0.84 +0.0 920,445 + HMPREF1058_RS15445 0.84 +2.1 920,448 + HMPREF1058_RS15445 0.85 +1.9 920,449 - HMPREF1058_RS15445 0.85 +0.8 920,462 + HMPREF1058_RS15445 0.86 +2.0 920,463 - HMPREF1058_RS15445 0.86 -1.2 920,463 - HMPREF1058_RS15445 0.86 +0.4 920,598 - +0.4 920,677 + +1.9 920,677 + +2.2 920,685 + +0.7 920,789 - +0.4 920,838 + +0.5 920,905 - -0.8 920,930 - HMPREF1058_RS15440 0.11 +0.2 920,964 + HMPREF1058_RS15440 0.13 -1.0 921,006 + HMPREF1058_RS15440 0.14 +0.2 921,067 + HMPREF1058_RS15440 0.17 +0.7 921,069 + HMPREF1058_RS15440 0.17 +0.5 921,072 - HMPREF1058_RS15440 0.17 +0.6 921,142 + HMPREF1058_RS15440 0.21 +1.6 921,187 - HMPREF1058_RS15440 0.23 -0.1 921,218 - HMPREF1058_RS15440 0.24 +0.8 921,307 + HMPREF1058_RS15440 0.28 +0.2 921,318 + HMPREF1058_RS15440 0.29 +0.3 921,319 - HMPREF1058_RS15440 0.29 +0.4 921,353 + HMPREF1058_RS15440 0.30 -0.2 921,378 + HMPREF1058_RS15440 0.32 +1.0 921,379 - HMPREF1058_RS15440 0.32 +0.3 921,381 + HMPREF1058_RS15440 0.32 +0.6 921,382 - HMPREF1058_RS15440 0.32 -0.3 921,668 - HMPREF1058_RS15440 0.45 +0.5 921,699 + HMPREF1058_RS15440 0.46 -0.2 921,699 + HMPREF1058_RS15440 0.46 +0.3 921,699 + HMPREF1058_RS15440 0.46 +0.8 921,699 + HMPREF1058_RS15440 0.46 +0.9 921,699 + HMPREF1058_RS15440 0.46 +1.4 921,700 - HMPREF1058_RS15440 0.46 +0.6 921,702 - HMPREF1058_RS15440 0.46 +0.2 921,859 + HMPREF1058_RS15440 0.54 +1.6 922,035 + HMPREF1058_RS15440 0.62 +1.4 922,036 - HMPREF1058_RS15440 0.62 +0.4 922,088 - HMPREF1058_RS15440 0.64 +1.3 922,088 - HMPREF1058_RS15440 0.64 +0.8 922,118 - HMPREF1058_RS15440 0.66 +0.2 922,150 + HMPREF1058_RS15440 0.67 +0.8 922,161 + HMPREF1058_RS15440 0.67 +2.0 922,183 - HMPREF1058_RS15440 0.69 +1.0 922,183 - HMPREF1058_RS15440 0.69 +0.7 922,183 - HMPREF1058_RS15440 0.69 -0.0 922,186 + HMPREF1058_RS15440 0.69 +1.9 922,267 + HMPREF1058_RS15440 0.72 +1.6 922,322 - HMPREF1058_RS15440 0.75 +0.6 922,361 + HMPREF1058_RS15440 0.77 +2.5 922,362 - HMPREF1058_RS15440 0.77 +0.9 922,395 - HMPREF1058_RS15440 0.78 -0.7 922,431 + HMPREF1058_RS15440 0.80 +1.7 922,478 - HMPREF1058_RS15440 0.82 +1.0 922,483 + HMPREF1058_RS15440 0.82 +1.7 922,531 - HMPREF1058_RS15440 0.84 +0.9 922,698 + +1.8 922,698 + +1.6 922,699 - +0.5 922,701 + +2.0 922,702 - +1.3 922,734 + +2.6 922,734 + +2.2 922,734 + +2.0 922,735 - +1.0 922,735 - +1.7 922,757 - +0.7 922,813 + +1.6 922,834 + +1.8 922,834 + +1.2 922,835 - +0.5 922,844 + +2.5 922,845 - -1.3 922,874 + +1.5 922,876 + +0.9 922,877 - +1.4 922,877 - +1.2 922,881 + +0.6 922,881 + +0.6 922,973 + HMPREF1058_RS15435 0.14 +0.1 922,974 - HMPREF1058_RS15435 0.14 +0.2 922,974 - HMPREF1058_RS15435 0.14 +0.7 922,975 + HMPREF1058_RS15435 0.14 +0.9 922,976 - HMPREF1058_RS15435 0.14 +0.5 922,998 - HMPREF1058_RS15435 0.17 -0.2 922,998 - HMPREF1058_RS15435 0.17 +0.1 922,998 - HMPREF1058_RS15435 0.17 -0.1 923,019 + HMPREF1058_RS15435 0.19 +1.6 923,099 - HMPREF1058_RS15435 0.29 +1.0 923,144 - HMPREF1058_RS15435 0.35 +0.4 923,148 - HMPREF1058_RS15435 0.35 -0.2 923,152 + HMPREF1058_RS15435 0.36 +0.6 923,157 - HMPREF1058_RS15435 0.36 +0.4 923,174 + HMPREF1058_RS15435 0.38 +0.7 923,174 + HMPREF1058_RS15435 0.38 +0.1 923,175 - HMPREF1058_RS15435 0.38 +0.2 923,247 + HMPREF1058_RS15435 0.47 +0.1 923,436 - HMPREF1058_RS15435 0.70 +0.7 923,436 - HMPREF1058_RS15435 0.70 +0.8 923,473 - HMPREF1058_RS15435 0.75 +0.7 923,489 - HMPREF1058_RS15435 0.77 +0.7 923,594 - HMPREF1058_RS15435 0.89 +0.5 923,644 - +0.4 923,691 - -1.0 923,691 - -0.6 923,691 - -1.3 923,791 - -1.1 923,791 - -1.9 923,820 + +2.3 923,821 - -2.1
Or see this region's nucleotide sequence