Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse16; day1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS10075 and HMPREF1058_RS10070 are separated by 156 nucleotides HMPREF1058_RS10070 and HMPREF1058_RS10065 are separated by 260 nucleotides
HMPREF1058_RS10075: HMPREF1058_RS10075 - 2-oxoacid:ferredoxin oxidoreductase subunit beta, at 727,509 to 728,513
_RS10075
HMPREF1058_RS10070: HMPREF1058_RS10070 - uracil phosphoribosyltransferase, at 728,670 to 729,329
_RS10070
HMPREF1058_RS10065: HMPREF1058_RS10065 - phosphoenolpyruvate carboxykinase (ATP), at 729,590 to 731,197
_RS10065
Position (kb) 728
729
730 Strain fitness (log2 ratio) -1
0
1 at 727.677 kb on + strand, within HMPREF1058_RS10075 at 727.680 kb on + strand, within HMPREF1058_RS10075 at 727.681 kb on - strand, within HMPREF1058_RS10075 at 727.688 kb on + strand, within HMPREF1058_RS10075 at 727.688 kb on + strand, within HMPREF1058_RS10075 at 727.689 kb on - strand, within HMPREF1058_RS10075 at 727.689 kb on - strand, within HMPREF1058_RS10075 at 727.689 kb on - strand, within HMPREF1058_RS10075 at 727.693 kb on - strand, within HMPREF1058_RS10075 at 727.728 kb on - strand, within HMPREF1058_RS10075 at 727.763 kb on + strand, within HMPREF1058_RS10075 at 727.900 kb on - strand, within HMPREF1058_RS10075 at 727.928 kb on + strand, within HMPREF1058_RS10075 at 728.072 kb on + strand, within HMPREF1058_RS10075 at 728.073 kb on - strand, within HMPREF1058_RS10075 at 728.086 kb on + strand, within HMPREF1058_RS10075 at 728.140 kb on + strand, within HMPREF1058_RS10075 at 728.141 kb on - strand, within HMPREF1058_RS10075 at 728.143 kb on - strand, within HMPREF1058_RS10075 at 728.144 kb on + strand, within HMPREF1058_RS10075 at 728.144 kb on + strand, within HMPREF1058_RS10075 at 728.145 kb on - strand, within HMPREF1058_RS10075 at 728.176 kb on - strand, within HMPREF1058_RS10075 at 728.210 kb on - strand, within HMPREF1058_RS10075 at 728.296 kb on + strand, within HMPREF1058_RS10075 at 728.409 kb on + strand, within HMPREF1058_RS10075 at 728.532 kb on - strand at 728.578 kb on + strand at 728.579 kb on - strand at 728.612 kb on - strand at 728.659 kb on + strand at 728.659 kb on + strand at 728.659 kb on + strand at 728.659 kb on + strand at 728.660 kb on - strand at 728.726 kb on - strand at 728.726 kb on - strand at 728.751 kb on + strand, within HMPREF1058_RS10070 at 728.801 kb on + strand, within HMPREF1058_RS10070 at 728.868 kb on - strand, within HMPREF1058_RS10070 at 728.977 kb on - strand, within HMPREF1058_RS10070 at 728.982 kb on + strand, within HMPREF1058_RS10070 at 728.988 kb on - strand, within HMPREF1058_RS10070 at 729.157 kb on - strand, within HMPREF1058_RS10070 at 729.197 kb on - strand, within HMPREF1058_RS10070 at 729.261 kb on + strand, within HMPREF1058_RS10070 at 729.262 kb on - strand, within HMPREF1058_RS10070 at 729.279 kb on + strand at 729.284 kb on - strand at 729.284 kb on - strand at 729.333 kb on + strand at 729.345 kb on - strand at 729.345 kb on - strand at 729.347 kb on - strand at 729.378 kb on - strand at 729.425 kb on + strand at 729.429 kb on + strand at 729.486 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse16; day1 remove 727,677 + HMPREF1058_RS10075 0.17 +0.1 727,680 + HMPREF1058_RS10075 0.17 +0.6 727,681 - HMPREF1058_RS10075 0.17 -0.3 727,688 + HMPREF1058_RS10075 0.18 -1.0 727,688 + HMPREF1058_RS10075 0.18 -0.2 727,689 - HMPREF1058_RS10075 0.18 +1.3 727,689 - HMPREF1058_RS10075 0.18 +0.8 727,689 - HMPREF1058_RS10075 0.18 +0.1 727,693 - HMPREF1058_RS10075 0.18 -0.1 727,728 - HMPREF1058_RS10075 0.22 -0.9 727,763 + HMPREF1058_RS10075 0.25 -0.1 727,900 - HMPREF1058_RS10075 0.39 -0.4 727,928 + HMPREF1058_RS10075 0.42 +0.1 728,072 + HMPREF1058_RS10075 0.56 -0.6 728,073 - HMPREF1058_RS10075 0.56 -0.1 728,086 + HMPREF1058_RS10075 0.57 -0.4 728,140 + HMPREF1058_RS10075 0.63 +0.8 728,141 - HMPREF1058_RS10075 0.63 +0.8 728,143 - HMPREF1058_RS10075 0.63 -0.2 728,144 + HMPREF1058_RS10075 0.63 -0.1 728,144 + HMPREF1058_RS10075 0.63 +0.4 728,145 - HMPREF1058_RS10075 0.63 +1.1 728,176 - HMPREF1058_RS10075 0.66 -0.4 728,210 - HMPREF1058_RS10075 0.70 +0.9 728,296 + HMPREF1058_RS10075 0.78 -0.1 728,409 + HMPREF1058_RS10075 0.90 +0.4 728,532 - -0.9 728,578 + -1.0 728,579 - +0.7 728,612 - -0.1 728,659 + -0.2 728,659 + -0.0 728,659 + -0.5 728,659 + -1.5 728,660 - +0.2 728,726 - +0.5 728,726 - +0.2 728,751 + HMPREF1058_RS10070 0.12 +0.2 728,801 + HMPREF1058_RS10070 0.20 -0.4 728,868 - HMPREF1058_RS10070 0.30 +0.8 728,977 - HMPREF1058_RS10070 0.47 +0.3 728,982 + HMPREF1058_RS10070 0.47 +0.8 728,988 - HMPREF1058_RS10070 0.48 -0.1 729,157 - HMPREF1058_RS10070 0.74 +0.1 729,197 - HMPREF1058_RS10070 0.80 +0.0 729,261 + HMPREF1058_RS10070 0.90 +0.0 729,262 - HMPREF1058_RS10070 0.90 +1.2 729,279 + +0.3 729,284 - -0.2 729,284 - +0.1 729,333 + +0.1 729,345 - -0.3 729,345 - -0.7 729,347 - +0.5 729,378 - -0.6 729,425 + -0.3 729,429 + -0.4 729,486 + +0.1
Or see this region's nucleotide sequence