Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS19175

Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse13; day1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS20315 and HMPREF1058_RS0119230 are separated by 277 nucleotidesHMPREF1058_RS0119230 and HMPREF1058_RS19175 are separated by 212 nucleotidesHMPREF1058_RS19175 and HMPREF1058_RS19170 overlap by 11 nucleotides HMPREF1058_RS20315: HMPREF1058_RS20315 - acyltransferase family protein, at 7,001 to 8,035 _RS20315 HMPREF1058_RS0119230: HMPREF1058_RS0119230 - Txe/YoeB family addiction module toxin, at 8,313 to 8,567 _RS0119230 HMPREF1058_RS19175: HMPREF1058_RS19175 - hypothetical protein, at 8,780 to 9,574 _RS19175 HMPREF1058_RS19170: HMPREF1058_RS19170 - AAA family ATPase, at 9,564 to 10,667 _RS19170 Position (kb) 8 9 10Strain fitness (log2 ratio) -2 -1 0 1 2at 7.823 kb on - strand, within HMPREF1058_RS20315at 7.860 kb on + strand, within HMPREF1058_RS20315at 7.860 kb on + strand, within HMPREF1058_RS20315at 7.861 kb on - strand, within HMPREF1058_RS20315at 7.861 kb on - strand, within HMPREF1058_RS20315at 7.862 kb on + strand, within HMPREF1058_RS20315at 7.899 kb on - strand, within HMPREF1058_RS20315at 7.901 kb on + strand, within HMPREF1058_RS20315at 7.902 kb on - strand, within HMPREF1058_RS20315at 7.949 kb on + strandat 7.983 kb on - strandat 8.010 kb on - strandat 8.118 kb on - strandat 8.122 kb on + strandat 8.129 kb on - strandat 8.310 kb on + strandat 8.366 kb on + strand, within HMPREF1058_RS0119230at 8.366 kb on + strand, within HMPREF1058_RS0119230at 8.366 kb on + strand, within HMPREF1058_RS0119230at 8.367 kb on - strand, within HMPREF1058_RS0119230at 8.367 kb on - strand, within HMPREF1058_RS0119230at 8.450 kb on - strand, within HMPREF1058_RS0119230at 8.454 kb on + strand, within HMPREF1058_RS0119230at 8.501 kb on + strand, within HMPREF1058_RS0119230at 8.502 kb on - strand, within HMPREF1058_RS0119230at 8.527 kb on + strand, within HMPREF1058_RS0119230at 8.527 kb on + strand, within HMPREF1058_RS0119230at 8.527 kb on + strand, within HMPREF1058_RS0119230at 8.528 kb on - strand, within HMPREF1058_RS0119230at 8.616 kb on - strandat 8.642 kb on + strandat 8.764 kb on - strandat 8.828 kb on + strandat 8.828 kb on + strandat 8.829 kb on - strandat 8.852 kb on + strandat 8.853 kb on - strandat 8.872 kb on + strand, within HMPREF1058_RS19175at 8.941 kb on + strand, within HMPREF1058_RS19175at 8.942 kb on - strand, within HMPREF1058_RS19175at 8.942 kb on - strand, within HMPREF1058_RS19175at 9.101 kb on - strand, within HMPREF1058_RS19175at 9.115 kb on + strand, within HMPREF1058_RS19175at 9.118 kb on - strand, within HMPREF1058_RS19175at 9.130 kb on + strand, within HMPREF1058_RS19175at 9.131 kb on - strand, within HMPREF1058_RS19175at 9.269 kb on - strand, within HMPREF1058_RS19175at 9.301 kb on - strand, within HMPREF1058_RS19175at 9.315 kb on + strand, within HMPREF1058_RS19175at 9.316 kb on - strand, within HMPREF1058_RS19175at 9.317 kb on + strand, within HMPREF1058_RS19175at 9.318 kb on - strand, within HMPREF1058_RS19175at 9.322 kb on - strand, within HMPREF1058_RS19175at 9.396 kb on - strand, within HMPREF1058_RS19175at 9.397 kb on + strand, within HMPREF1058_RS19175at 9.425 kb on + strand, within HMPREF1058_RS19175at 9.437 kb on + strand, within HMPREF1058_RS19175at 9.437 kb on + strand, within HMPREF1058_RS19175at 9.437 kb on + strand, within HMPREF1058_RS19175at 9.438 kb on - strand, within HMPREF1058_RS19175at 9.438 kb on - strand, within HMPREF1058_RS19175at 9.444 kb on + strand, within HMPREF1058_RS19175at 9.462 kb on - strand, within HMPREF1058_RS19175at 9.635 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse13; day1
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7,823 - HMPREF1058_RS20315 0.79 +0.5
7,860 + HMPREF1058_RS20315 0.83 -0.2
7,860 + HMPREF1058_RS20315 0.83 +0.2
7,861 - HMPREF1058_RS20315 0.83 +1.1
7,861 - HMPREF1058_RS20315 0.83 -0.2
7,862 + HMPREF1058_RS20315 0.83 +0.2
7,899 - HMPREF1058_RS20315 0.87 +1.5
7,901 + HMPREF1058_RS20315 0.87 +0.1
7,902 - HMPREF1058_RS20315 0.87 -1.2
7,949 + -1.5
7,983 - +1.0
8,010 - -0.2
8,118 - -0.1
8,122 + -0.5
8,129 - +0.8
8,310 + -2.0
8,366 + HMPREF1058_RS0119230 0.21 -0.7
8,366 + HMPREF1058_RS0119230 0.21 -0.8
8,366 + HMPREF1058_RS0119230 0.21 +1.9
8,367 - HMPREF1058_RS0119230 0.21 -0.2
8,367 - HMPREF1058_RS0119230 0.21 -0.9
8,450 - HMPREF1058_RS0119230 0.54 +0.2
8,454 + HMPREF1058_RS0119230 0.55 +0.5
8,501 + HMPREF1058_RS0119230 0.74 +1.1
8,502 - HMPREF1058_RS0119230 0.74 +1.1
8,527 + HMPREF1058_RS0119230 0.84 -0.9
8,527 + HMPREF1058_RS0119230 0.84 -0.1
8,527 + HMPREF1058_RS0119230 0.84 +0.5
8,528 - HMPREF1058_RS0119230 0.84 +0.2
8,616 - +0.5
8,642 + -0.5
8,764 - +0.3
8,828 + -0.4
8,828 + -0.1
8,829 - -0.7
8,852 + +1.7
8,853 - +0.6
8,872 + HMPREF1058_RS19175 0.12 +0.4
8,941 + HMPREF1058_RS19175 0.20 -0.5
8,942 - HMPREF1058_RS19175 0.20 -0.4
8,942 - HMPREF1058_RS19175 0.20 +0.4
9,101 - HMPREF1058_RS19175 0.40 +1.2
9,115 + HMPREF1058_RS19175 0.42 +0.7
9,118 - HMPREF1058_RS19175 0.43 -0.2
9,130 + HMPREF1058_RS19175 0.44 +0.1
9,131 - HMPREF1058_RS19175 0.44 -0.1
9,269 - HMPREF1058_RS19175 0.62 -0.2
9,301 - HMPREF1058_RS19175 0.66 +1.2
9,315 + HMPREF1058_RS19175 0.67 +1.0
9,316 - HMPREF1058_RS19175 0.67 -1.1
9,317 + HMPREF1058_RS19175 0.68 -0.3
9,318 - HMPREF1058_RS19175 0.68 -0.3
9,322 - HMPREF1058_RS19175 0.68 +0.1
9,396 - HMPREF1058_RS19175 0.77 -0.1
9,397 + HMPREF1058_RS19175 0.78 +0.1
9,425 + HMPREF1058_RS19175 0.81 +0.1
9,437 + HMPREF1058_RS19175 0.83 +2.0
9,437 + HMPREF1058_RS19175 0.83 -0.2
9,437 + HMPREF1058_RS19175 0.83 -0.3
9,438 - HMPREF1058_RS19175 0.83 +0.4
9,438 - HMPREF1058_RS19175 0.83 -0.2
9,444 + HMPREF1058_RS19175 0.84 +1.0
9,462 - HMPREF1058_RS19175 0.86 -0.5
9,635 + -0.1

Or see this region's nucleotide sequence