Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse13; day1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS19005 and HMPREF1058_RS19000 are separated by 6 nucleotides HMPREF1058_RS19000 and HMPREF1058_RS18995 are separated by 246 nucleotides HMPREF1058_RS18995 and HMPREF1058_RS18990 are separated by 2 nucleotides HMPREF1058_RS18990 and HMPREF1058_RS20345 are separated by 16 nucleotides HMPREF1058_RS20345 and HMPREF1058_RS20350 are separated by 237 nucleotides HMPREF1058_RS20350 and HMPREF1058_RS18980 are separated by 21 nucleotides
HMPREF1058_RS19005: HMPREF1058_RS19005 - HigA family addiction module antidote protein, at 34,086 to 34,430
_RS19005
HMPREF1058_RS19000: HMPREF1058_RS19000 - type II toxin-antitoxin system RelE/ParE family toxin, at 34,437 to 34,754
_RS19000
HMPREF1058_RS18995: HMPREF1058_RS18995 - hypothetical protein, at 35,001 to 35,255
_RS18995
HMPREF1058_RS18990: HMPREF1058_RS18990 - hypothetical protein, at 35,258 to 35,851
_RS18990
HMPREF1058_RS20345: HMPREF1058_RS20345 - helix-turn-helix domain-containing protein, at 35,868 to 36,080
_RS20345
HMPREF1058_RS20350: HMPREF1058_RS20350 - hypothetical protein, at 36,318 to 36,506
_RS20350
HMPREF1058_RS18980: HMPREF1058_RS18980 - SGNH/GDSL hydrolase family protein, at 36,528 to 37,451
_RS18980
Position (kb) 35
36 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 34.467 kb on - strand at 34.512 kb on - strand, within HMPREF1058_RS19000 at 34.598 kb on - strand, within HMPREF1058_RS19000 at 34.642 kb on - strand, within HMPREF1058_RS19000 at 34.653 kb on - strand, within HMPREF1058_RS19000 at 34.653 kb on - strand, within HMPREF1058_RS19000 at 34.655 kb on - strand, within HMPREF1058_RS19000 at 34.655 kb on - strand, within HMPREF1058_RS19000 at 34.659 kb on - strand, within HMPREF1058_RS19000 at 34.715 kb on - strand, within HMPREF1058_RS19000 at 34.789 kb on - strand at 34.863 kb on - strand at 34.866 kb on + strand at 34.872 kb on - strand at 34.898 kb on + strand at 34.909 kb on + strand at 35.001 kb on - strand at 35.007 kb on - strand at 35.009 kb on - strand at 35.009 kb on - strand at 35.009 kb on - strand at 35.009 kb on - strand at 35.019 kb on - strand at 35.039 kb on - strand, within HMPREF1058_RS18995 at 35.078 kb on + strand, within HMPREF1058_RS18995 at 35.078 kb on + strand, within HMPREF1058_RS18995 at 35.105 kb on + strand, within HMPREF1058_RS18995 at 35.110 kb on - strand, within HMPREF1058_RS18995 at 35.152 kb on + strand, within HMPREF1058_RS18995 at 35.172 kb on - strand, within HMPREF1058_RS18995 at 35.184 kb on - strand, within HMPREF1058_RS18995 at 35.281 kb on + strand at 35.282 kb on - strand at 35.289 kb on - strand at 35.289 kb on - strand at 35.289 kb on - strand at 35.299 kb on - strand at 35.324 kb on + strand, within HMPREF1058_RS18990 at 35.324 kb on + strand, within HMPREF1058_RS18990 at 35.326 kb on + strand, within HMPREF1058_RS18990 at 35.327 kb on - strand, within HMPREF1058_RS18990 at 35.333 kb on + strand, within HMPREF1058_RS18990 at 35.334 kb on - strand, within HMPREF1058_RS18990 at 35.334 kb on - strand, within HMPREF1058_RS18990 at 35.381 kb on + strand, within HMPREF1058_RS18990 at 35.404 kb on + strand, within HMPREF1058_RS18990 at 35.407 kb on - strand, within HMPREF1058_RS18990 at 35.445 kb on + strand, within HMPREF1058_RS18990 at 35.445 kb on + strand, within HMPREF1058_RS18990 at 35.446 kb on - strand, within HMPREF1058_RS18990 at 35.447 kb on + strand, within HMPREF1058_RS18990 at 35.493 kb on + strand, within HMPREF1058_RS18990 at 35.494 kb on - strand, within HMPREF1058_RS18990 at 35.496 kb on - strand, within HMPREF1058_RS18990 at 35.525 kb on + strand, within HMPREF1058_RS18990 at 35.526 kb on - strand, within HMPREF1058_RS18990 at 35.558 kb on + strand, within HMPREF1058_RS18990 at 35.558 kb on + strand, within HMPREF1058_RS18990 at 35.559 kb on - strand, within HMPREF1058_RS18990 at 35.590 kb on + strand, within HMPREF1058_RS18990 at 35.662 kb on - strand, within HMPREF1058_RS18990 at 35.684 kb on - strand, within HMPREF1058_RS18990 at 35.866 kb on + strand at 36.094 kb on - strand at 36.162 kb on + strand at 36.332 kb on + strand at 36.381 kb on - strand, within HMPREF1058_RS20350 at 36.382 kb on + strand, within HMPREF1058_RS20350 at 36.450 kb on - strand, within HMPREF1058_RS20350 at 36.478 kb on + strand, within HMPREF1058_RS20350 at 36.478 kb on + strand, within HMPREF1058_RS20350 at 36.586 kb on + strand at 36.586 kb on + strand at 36.587 kb on - strand at 36.587 kb on - strand at 36.587 kb on - strand at 36.638 kb on + strand, within HMPREF1058_RS18980 at 36.639 kb on - strand, within HMPREF1058_RS18980 at 36.701 kb on + strand, within HMPREF1058_RS18980 at 36.708 kb on + strand, within HMPREF1058_RS18980 at 36.709 kb on - strand, within HMPREF1058_RS18980 at 36.709 kb on - strand, within HMPREF1058_RS18980 at 36.715 kb on + strand, within HMPREF1058_RS18980 at 36.715 kb on + strand, within HMPREF1058_RS18980 at 36.715 kb on + strand, within HMPREF1058_RS18980
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse13; day1 remove 34,467 - +0.6 34,512 - HMPREF1058_RS19000 0.24 -0.2 34,598 - HMPREF1058_RS19000 0.51 +0.8 34,642 - HMPREF1058_RS19000 0.64 +0.4 34,653 - HMPREF1058_RS19000 0.68 -0.4 34,653 - HMPREF1058_RS19000 0.68 -0.1 34,655 - HMPREF1058_RS19000 0.69 +2.4 34,655 - HMPREF1058_RS19000 0.69 -0.5 34,659 - HMPREF1058_RS19000 0.70 -0.1 34,715 - HMPREF1058_RS19000 0.87 +2.5 34,789 - +0.1 34,863 - -0.1 34,866 + -0.6 34,872 - +0.6 34,898 + -0.7 34,909 + -0.2 35,001 - -0.1 35,007 - +0.1 35,009 - -0.9 35,009 - -0.6 35,009 - -0.9 35,009 - +2.1 35,019 - +0.1 35,039 - HMPREF1058_RS18995 0.15 -0.0 35,078 + HMPREF1058_RS18995 0.30 +0.2 35,078 + HMPREF1058_RS18995 0.30 -0.1 35,105 + HMPREF1058_RS18995 0.41 -0.0 35,110 - HMPREF1058_RS18995 0.43 +1.1 35,152 + HMPREF1058_RS18995 0.59 -0.4 35,172 - HMPREF1058_RS18995 0.67 +0.0 35,184 - HMPREF1058_RS18995 0.72 -0.6 35,281 + -0.1 35,282 - +1.8 35,289 - +0.3 35,289 - +0.1 35,289 - -0.9 35,299 - -0.2 35,324 + HMPREF1058_RS18990 0.11 +0.7 35,324 + HMPREF1058_RS18990 0.11 +0.1 35,326 + HMPREF1058_RS18990 0.11 +0.1 35,327 - HMPREF1058_RS18990 0.12 -1.7 35,333 + HMPREF1058_RS18990 0.13 +3.3 35,334 - HMPREF1058_RS18990 0.13 +0.7 35,334 - HMPREF1058_RS18990 0.13 +0.3 35,381 + HMPREF1058_RS18990 0.21 -0.0 35,404 + HMPREF1058_RS18990 0.25 -1.3 35,407 - HMPREF1058_RS18990 0.25 +0.6 35,445 + HMPREF1058_RS18990 0.31 -0.5 35,445 + HMPREF1058_RS18990 0.31 -0.3 35,446 - HMPREF1058_RS18990 0.32 +0.4 35,447 + HMPREF1058_RS18990 0.32 -0.8 35,493 + HMPREF1058_RS18990 0.40 -0.5 35,494 - HMPREF1058_RS18990 0.40 +0.9 35,496 - HMPREF1058_RS18990 0.40 +2.7 35,525 + HMPREF1058_RS18990 0.45 +0.0 35,526 - HMPREF1058_RS18990 0.45 -0.1 35,558 + HMPREF1058_RS18990 0.51 -0.1 35,558 + HMPREF1058_RS18990 0.51 +1.3 35,559 - HMPREF1058_RS18990 0.51 +1.5 35,590 + HMPREF1058_RS18990 0.56 +0.1 35,662 - HMPREF1058_RS18990 0.68 +0.2 35,684 - HMPREF1058_RS18990 0.72 +0.9 35,866 + -0.6 36,094 - +0.3 36,162 + -0.5 36,332 + -0.0 36,381 - HMPREF1058_RS20350 0.33 +0.8 36,382 + HMPREF1058_RS20350 0.34 -0.5 36,450 - HMPREF1058_RS20350 0.70 -1.5 36,478 + HMPREF1058_RS20350 0.85 +0.1 36,478 + HMPREF1058_RS20350 0.85 -0.5 36,586 + -0.1 36,586 + +0.3 36,587 - +0.2 36,587 - +0.1 36,587 - +0.6 36,638 + HMPREF1058_RS18980 0.12 +0.6 36,639 - HMPREF1058_RS18980 0.12 -1.9 36,701 + HMPREF1058_RS18980 0.19 +0.1 36,708 + HMPREF1058_RS18980 0.19 +1.2 36,709 - HMPREF1058_RS18980 0.20 -0.0 36,709 - HMPREF1058_RS18980 0.20 +0.1 36,715 + HMPREF1058_RS18980 0.20 +0.5 36,715 + HMPREF1058_RS18980 0.20 +0.6 36,715 + HMPREF1058_RS18980 0.20 -0.0
Or see this region's nucleotide sequence