Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse13; day1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS10845 and HMPREF1058_RS10840 are separated by 15 nucleotides HMPREF1058_RS10840 and HMPREF1058_RS10835 are separated by 83 nucleotides HMPREF1058_RS10835 and HMPREF1058_RS10830 are separated by 2 nucleotides HMPREF1058_RS10830 and HMPREF1058_RS10825 are separated by 0 nucleotides
HMPREF1058_RS10845: HMPREF1058_RS10845 - hypothetical protein, at 549,538 to 550,290
_RS10845
HMPREF1058_RS10840: HMPREF1058_RS10840 - hypothetical protein, at 550,306 to 551,022
_RS10840
HMPREF1058_RS10835: HMPREF1058_RS10835 - UDP-galactopyranose mutase, at 551,106 to 552,212
_RS10835
HMPREF1058_RS10830: HMPREF1058_RS10830 - lysophospholipid acyltransferase family protein, at 552,215 to 553,138
_RS10830
HMPREF1058_RS10825: HMPREF1058_RS10825 - glycosyltransferase family 9 protein, at 553,139 to 554,170
_RS10825
Position (kb) 551
552
553 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 550.479 kb on - strand, within HMPREF1058_RS10840 at 550.692 kb on - strand, within HMPREF1058_RS10840 at 550.796 kb on - strand, within HMPREF1058_RS10840 at 550.800 kb on - strand, within HMPREF1058_RS10840 at 551.036 kb on - strand at 551.059 kb on - strand at 551.059 kb on - strand at 551.167 kb on + strand at 551.315 kb on - strand, within HMPREF1058_RS10835 at 551.323 kb on - strand, within HMPREF1058_RS10835 at 551.377 kb on + strand, within HMPREF1058_RS10835 at 551.444 kb on + strand, within HMPREF1058_RS10835 at 551.444 kb on + strand, within HMPREF1058_RS10835 at 551.445 kb on - strand, within HMPREF1058_RS10835 at 551.505 kb on + strand, within HMPREF1058_RS10835 at 551.505 kb on + strand, within HMPREF1058_RS10835 at 551.566 kb on + strand, within HMPREF1058_RS10835 at 551.566 kb on + strand, within HMPREF1058_RS10835 at 551.859 kb on + strand, within HMPREF1058_RS10835 at 551.860 kb on - strand, within HMPREF1058_RS10835 at 552.000 kb on + strand, within HMPREF1058_RS10835 at 552.001 kb on - strand, within HMPREF1058_RS10835 at 552.005 kb on - strand, within HMPREF1058_RS10835 at 552.020 kb on + strand, within HMPREF1058_RS10835 at 552.050 kb on - strand, within HMPREF1058_RS10835 at 552.053 kb on + strand, within HMPREF1058_RS10835 at 552.073 kb on - strand, within HMPREF1058_RS10835 at 552.074 kb on + strand, within HMPREF1058_RS10835 at 552.089 kb on + strand, within HMPREF1058_RS10835 at 552.186 kb on + strand at 552.187 kb on - strand at 552.196 kb on + strand at 553.167 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse13; day1 remove 550,479 - HMPREF1058_RS10840 0.24 -3.3 550,692 - HMPREF1058_RS10840 0.54 -5.7 550,796 - HMPREF1058_RS10840 0.68 -4.6 550,800 - HMPREF1058_RS10840 0.69 -1.9 551,036 - -0.1 551,059 - +2.2 551,059 - +0.1 551,167 + -2.3 551,315 - HMPREF1058_RS10835 0.19 -2.8 551,323 - HMPREF1058_RS10835 0.20 -0.3 551,377 + HMPREF1058_RS10835 0.24 -2.1 551,444 + HMPREF1058_RS10835 0.31 -3.3 551,444 + HMPREF1058_RS10835 0.31 -3.0 551,445 - HMPREF1058_RS10835 0.31 -1.3 551,505 + HMPREF1058_RS10835 0.36 -2.6 551,505 + HMPREF1058_RS10835 0.36 -3.3 551,566 + HMPREF1058_RS10835 0.42 -2.9 551,566 + HMPREF1058_RS10835 0.42 -1.4 551,859 + HMPREF1058_RS10835 0.68 -3.5 551,860 - HMPREF1058_RS10835 0.68 -3.2 552,000 + HMPREF1058_RS10835 0.81 -1.3 552,001 - HMPREF1058_RS10835 0.81 -4.7 552,005 - HMPREF1058_RS10835 0.81 -2.7 552,020 + HMPREF1058_RS10835 0.83 -3.1 552,050 - HMPREF1058_RS10835 0.85 -3.3 552,053 + HMPREF1058_RS10835 0.86 -1.3 552,073 - HMPREF1058_RS10835 0.87 -2.7 552,074 + HMPREF1058_RS10835 0.87 -2.3 552,089 + HMPREF1058_RS10835 0.89 -2.8 552,186 + -1.9 552,187 - -3.1 552,196 + -3.3 553,167 - -0.4
Or see this region's nucleotide sequence