Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse13; day1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS10725 and HMPREF1058_RS10720 are separated by 147 nucleotides HMPREF1058_RS10720 and HMPREF1058_RS10715 are separated by 4 nucleotides
HMPREF1058_RS10725: HMPREF1058_RS10725 - 6-phosphofructokinase, at 585,660 to 586,670
_RS10725
HMPREF1058_RS10720: HMPREF1058_RS10720 - GH3 auxin-responsive promoter family protein, at 586,818 to 588,323
_RS10720
HMPREF1058_RS10715: HMPREF1058_RS10715 - Ig-like domain-containing protein, at 588,328 to 590,250
_RS10715
Position (kb) 586
587
588
589 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 585.887 kb on + strand, within HMPREF1058_RS10725 at 585.889 kb on + strand, within HMPREF1058_RS10725 at 585.947 kb on + strand, within HMPREF1058_RS10725 at 585.947 kb on + strand, within HMPREF1058_RS10725 at 585.947 kb on + strand, within HMPREF1058_RS10725 at 585.947 kb on + strand, within HMPREF1058_RS10725 at 586.051 kb on - strand, within HMPREF1058_RS10725 at 586.052 kb on + strand, within HMPREF1058_RS10725 at 586.052 kb on + strand, within HMPREF1058_RS10725 at 586.055 kb on + strand, within HMPREF1058_RS10725 at 586.056 kb on - strand, within HMPREF1058_RS10725 at 586.140 kb on - strand, within HMPREF1058_RS10725 at 586.283 kb on + strand, within HMPREF1058_RS10725 at 586.359 kb on + strand, within HMPREF1058_RS10725 at 586.359 kb on + strand, within HMPREF1058_RS10725 at 586.359 kb on + strand, within HMPREF1058_RS10725 at 586.683 kb on + strand at 586.727 kb on + strand at 586.753 kb on - strand at 586.762 kb on + strand at 586.762 kb on + strand at 586.764 kb on + strand at 586.764 kb on + strand at 586.764 kb on + strand at 586.765 kb on - strand at 586.770 kb on - strand at 586.793 kb on + strand at 586.827 kb on - strand at 586.834 kb on + strand at 586.963 kb on - strand at 586.978 kb on + strand, within HMPREF1058_RS10720 at 586.979 kb on - strand, within HMPREF1058_RS10720 at 587.005 kb on + strand, within HMPREF1058_RS10720 at 587.009 kb on + strand at 587.037 kb on + strand, within HMPREF1058_RS10720 at 587.037 kb on + strand, within HMPREF1058_RS10720 at 587.038 kb on - strand at 587.041 kb on + strand, within HMPREF1058_RS10720 at 587.120 kb on + strand, within HMPREF1058_RS10720 at 587.280 kb on + strand, within HMPREF1058_RS10720 at 587.281 kb on - strand, within HMPREF1058_RS10720 at 587.302 kb on + strand, within HMPREF1058_RS10720 at 587.493 kb on - strand, within HMPREF1058_RS10720 at 587.493 kb on - strand, within HMPREF1058_RS10720 at 587.603 kb on + strand, within HMPREF1058_RS10720 at 587.628 kb on - strand, within HMPREF1058_RS10720 at 587.637 kb on + strand, within HMPREF1058_RS10720 at 587.721 kb on + strand, within HMPREF1058_RS10720 at 587.766 kb on - strand, within HMPREF1058_RS10720 at 587.819 kb on + strand at 587.841 kb on + strand, within HMPREF1058_RS10720 at 587.843 kb on + strand, within HMPREF1058_RS10720 at 587.895 kb on - strand, within HMPREF1058_RS10720 at 587.897 kb on - strand, within HMPREF1058_RS10720 at 588.081 kb on - strand, within HMPREF1058_RS10720 at 588.291 kb on + strand at 588.291 kb on + strand at 588.293 kb on + strand at 588.293 kb on + strand at 588.293 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse13; day1 remove 585,887 + HMPREF1058_RS10725 0.22 -1.0 585,889 + HMPREF1058_RS10725 0.23 -0.3 585,947 + HMPREF1058_RS10725 0.28 -2.1 585,947 + HMPREF1058_RS10725 0.28 +0.3 585,947 + HMPREF1058_RS10725 0.28 -0.3 585,947 + HMPREF1058_RS10725 0.28 +0.2 586,051 - HMPREF1058_RS10725 0.39 +0.1 586,052 + HMPREF1058_RS10725 0.39 +0.2 586,052 + HMPREF1058_RS10725 0.39 -0.2 586,055 + HMPREF1058_RS10725 0.39 -0.3 586,056 - HMPREF1058_RS10725 0.39 -0.7 586,140 - HMPREF1058_RS10725 0.47 -0.1 586,283 + HMPREF1058_RS10725 0.62 -0.5 586,359 + HMPREF1058_RS10725 0.69 -1.0 586,359 + HMPREF1058_RS10725 0.69 -0.5 586,359 + HMPREF1058_RS10725 0.69 +0.2 586,683 + -0.4 586,727 + -0.7 586,753 - -0.0 586,762 + -0.6 586,762 + +0.8 586,764 + -0.7 586,764 + -0.5 586,764 + -0.7 586,765 - -1.3 586,770 - -1.3 586,793 + +0.2 586,827 - -0.9 586,834 + -2.8 586,963 - -2.3 586,978 + HMPREF1058_RS10720 0.11 -2.3 586,979 - HMPREF1058_RS10720 0.11 -0.8 587,005 + HMPREF1058_RS10720 0.12 -1.4 587,009 + +0.7 587,037 + HMPREF1058_RS10720 0.15 -0.7 587,037 + HMPREF1058_RS10720 0.15 -1.3 587,038 - -2.9 587,041 + HMPREF1058_RS10720 0.15 -1.9 587,120 + HMPREF1058_RS10720 0.20 -1.5 587,280 + HMPREF1058_RS10720 0.31 -1.6 587,281 - HMPREF1058_RS10720 0.31 -1.1 587,302 + HMPREF1058_RS10720 0.32 -0.9 587,493 - HMPREF1058_RS10720 0.45 -1.8 587,493 - HMPREF1058_RS10720 0.45 -1.5 587,603 + HMPREF1058_RS10720 0.52 -0.7 587,628 - HMPREF1058_RS10720 0.54 -1.3 587,637 + HMPREF1058_RS10720 0.54 -2.5 587,721 + HMPREF1058_RS10720 0.60 -1.4 587,766 - HMPREF1058_RS10720 0.63 -1.3 587,819 + -0.0 587,841 + HMPREF1058_RS10720 0.68 -2.1 587,843 + HMPREF1058_RS10720 0.68 -1.3 587,895 - HMPREF1058_RS10720 0.72 -0.3 587,897 - HMPREF1058_RS10720 0.72 -1.5 588,081 - HMPREF1058_RS10720 0.84 -0.7 588,291 + -0.9 588,291 + -1.0 588,293 + -1.9 588,293 + -2.7 588,293 + -0.9
Or see this region's nucleotide sequence