Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS10295

Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse13; day1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS0119660 and HMPREF1058_RS10295 are separated by 180 nucleotidesHMPREF1058_RS10295 and HMPREF1058_RS10290 overlap by 4 nucleotidesHMPREF1058_RS10290 and HMPREF1058_RS10285 overlap by 4 nucleotidesHMPREF1058_RS10285 and HMPREF1058_RS10275 are separated by 309 nucleotides HMPREF1058_RS0119660: HMPREF1058_RS0119660 - DNA cytosine methyltransferase, at 693,868 to 694,671 _RS0119660 HMPREF1058_RS10295: HMPREF1058_RS10295 - hypothetical protein, at 694,852 to 695,319 _RS10295 HMPREF1058_RS10290: HMPREF1058_RS10290 - hypothetical protein, at 695,316 to 695,621 _RS10290 HMPREF1058_RS10285: HMPREF1058_RS10285 - hypothetical protein, at 695,618 to 695,902 _RS10285 HMPREF1058_RS10275: HMPREF1058_RS10275 - RNA-splicing ligase RtcB, at 696,212 to 697,399 _RS10275 Position (kb) 694 695 696Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 694.019 kb on + strand, within HMPREF1058_RS0119660at 694.022 kb on + strand, within HMPREF1058_RS0119660at 694.023 kb on - strand, within HMPREF1058_RS0119660at 694.023 kb on - strand, within HMPREF1058_RS0119660at 694.023 kb on - strand, within HMPREF1058_RS0119660at 694.023 kb on - strand, within HMPREF1058_RS0119660at 694.038 kb on - strand, within HMPREF1058_RS0119660at 694.080 kb on - strand, within HMPREF1058_RS0119660at 694.084 kb on + strand, within HMPREF1058_RS0119660at 694.085 kb on - strand, within HMPREF1058_RS0119660at 694.089 kb on + strand, within HMPREF1058_RS0119660at 694.100 kb on - strand, within HMPREF1058_RS0119660at 694.127 kb on - strand, within HMPREF1058_RS0119660at 694.204 kb on - strand, within HMPREF1058_RS0119660at 694.214 kb on + strand, within HMPREF1058_RS0119660at 694.236 kb on - strand, within HMPREF1058_RS0119660at 694.240 kb on - strand, within HMPREF1058_RS0119660at 694.254 kb on - strand, within HMPREF1058_RS0119660at 694.261 kb on + strand, within HMPREF1058_RS0119660at 694.262 kb on - strand, within HMPREF1058_RS0119660at 694.263 kb on + strand, within HMPREF1058_RS0119660at 694.264 kb on - strand, within HMPREF1058_RS0119660at 694.265 kb on + strand, within HMPREF1058_RS0119660at 694.265 kb on + strand, within HMPREF1058_RS0119660at 694.266 kb on - strand, within HMPREF1058_RS0119660at 694.291 kb on - strand, within HMPREF1058_RS0119660at 694.295 kb on + strand, within HMPREF1058_RS0119660at 694.295 kb on + strand, within HMPREF1058_RS0119660at 694.295 kb on + strand, within HMPREF1058_RS0119660at 694.296 kb on - strand, within HMPREF1058_RS0119660at 694.296 kb on - strand, within HMPREF1058_RS0119660at 694.296 kb on - strand, within HMPREF1058_RS0119660at 694.296 kb on - strand, within HMPREF1058_RS0119660at 694.298 kb on - strand, within HMPREF1058_RS0119660at 694.298 kb on - strand, within HMPREF1058_RS0119660at 694.298 kb on - strand, within HMPREF1058_RS0119660at 694.298 kb on - strand, within HMPREF1058_RS0119660at 694.298 kb on - strand, within HMPREF1058_RS0119660at 694.330 kb on + strand, within HMPREF1058_RS0119660at 694.379 kb on + strand, within HMPREF1058_RS0119660at 694.380 kb on - strand, within HMPREF1058_RS0119660at 694.380 kb on - strand, within HMPREF1058_RS0119660at 694.380 kb on - strand, within HMPREF1058_RS0119660at 694.464 kb on + strand, within HMPREF1058_RS0119660at 694.537 kb on - strand, within HMPREF1058_RS0119660at 694.537 kb on - strand, within HMPREF1058_RS0119660at 694.540 kb on - strand, within HMPREF1058_RS0119660at 694.588 kb on + strand, within HMPREF1058_RS0119660at 694.588 kb on + strand, within HMPREF1058_RS0119660at 694.589 kb on - strand, within HMPREF1058_RS0119660at 694.600 kb on - strandat 694.600 kb on - strandat 694.642 kb on - strandat 694.646 kb on - strandat 694.668 kb on - strandat 694.682 kb on + strandat 694.683 kb on - strandat 694.725 kb on - strandat 694.725 kb on - strandat 694.745 kb on + strandat 694.847 kb on - strandat 694.848 kb on + strandat 694.849 kb on - strandat 694.849 kb on - strandat 694.892 kb on + strandat 694.902 kb on + strand, within HMPREF1058_RS10295at 694.977 kb on + strand, within HMPREF1058_RS10295at 695.166 kb on - strand, within HMPREF1058_RS10295at 695.371 kb on + strand, within HMPREF1058_RS10290at 695.395 kb on + strand, within HMPREF1058_RS10290at 695.517 kb on + strand, within HMPREF1058_RS10290at 695.517 kb on + strand, within HMPREF1058_RS10290at 695.537 kb on + strand, within HMPREF1058_RS10290at 695.537 kb on + strand, within HMPREF1058_RS10290at 695.538 kb on - strand, within HMPREF1058_RS10290at 695.547 kb on - strand, within HMPREF1058_RS10290at 695.606 kb on + strandat 695.617 kb on + strandat 695.625 kb on - strandat 695.658 kb on + strand, within HMPREF1058_RS10285at 695.663 kb on - strand, within HMPREF1058_RS10285at 695.691 kb on + strand, within HMPREF1058_RS10285at 695.767 kb on - strand, within HMPREF1058_RS10285at 695.848 kb on - strand, within HMPREF1058_RS10285at 695.858 kb on + strand, within HMPREF1058_RS10285at 695.858 kb on + strand, within HMPREF1058_RS10285at 695.859 kb on - strand, within HMPREF1058_RS10285at 695.883 kb on + strandat 695.907 kb on - strandat 695.912 kb on + strandat 695.912 kb on + strandat 695.922 kb on + strandat 695.923 kb on - strandat 695.923 kb on - strandat 695.926 kb on + strandat 695.927 kb on - strandat 695.928 kb on + strandat 695.929 kb on - strandat 695.957 kb on - strandat 696.002 kb on + strandat 696.002 kb on + strandat 696.053 kb on + strandat 696.054 kb on - strandat 696.085 kb on + strandat 696.111 kb on + strandat 696.111 kb on + strandat 696.112 kb on - strandat 696.199 kb on - strandat 696.305 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse13; day1
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694,019 + HMPREF1058_RS0119660 0.19 -2.1
694,022 + HMPREF1058_RS0119660 0.19 -2.3
694,023 - HMPREF1058_RS0119660 0.19 +0.0
694,023 - HMPREF1058_RS0119660 0.19 +0.3
694,023 - HMPREF1058_RS0119660 0.19 -0.9
694,023 - HMPREF1058_RS0119660 0.19 +0.2
694,038 - HMPREF1058_RS0119660 0.21 +0.4
694,080 - HMPREF1058_RS0119660 0.26 -0.7
694,084 + HMPREF1058_RS0119660 0.27 -2.9
694,085 - HMPREF1058_RS0119660 0.27 +0.1
694,089 + HMPREF1058_RS0119660 0.27 -2.1
694,100 - HMPREF1058_RS0119660 0.29 -0.3
694,127 - HMPREF1058_RS0119660 0.32 +0.5
694,204 - HMPREF1058_RS0119660 0.42 +0.3
694,214 + HMPREF1058_RS0119660 0.43 -1.9
694,236 - HMPREF1058_RS0119660 0.46 -0.3
694,240 - HMPREF1058_RS0119660 0.46 +0.2
694,254 - HMPREF1058_RS0119660 0.48 -0.0
694,261 + HMPREF1058_RS0119660 0.49 -3.1
694,262 - HMPREF1058_RS0119660 0.49 +0.2
694,263 + HMPREF1058_RS0119660 0.49 -1.3
694,264 - HMPREF1058_RS0119660 0.49 -0.5
694,265 + HMPREF1058_RS0119660 0.49 -2.1
694,265 + HMPREF1058_RS0119660 0.49 -2.8
694,266 - HMPREF1058_RS0119660 0.50 +0.1
694,291 - HMPREF1058_RS0119660 0.53 +1.5
694,295 + HMPREF1058_RS0119660 0.53 -2.3
694,295 + HMPREF1058_RS0119660 0.53 -1.3
694,295 + HMPREF1058_RS0119660 0.53 -2.2
694,296 - HMPREF1058_RS0119660 0.53 -0.2
694,296 - HMPREF1058_RS0119660 0.53 -1.3
694,296 - HMPREF1058_RS0119660 0.53 -0.1
694,296 - HMPREF1058_RS0119660 0.53 +0.2
694,298 - HMPREF1058_RS0119660 0.53 -0.2
694,298 - HMPREF1058_RS0119660 0.53 -0.0
694,298 - HMPREF1058_RS0119660 0.53 +0.2
694,298 - HMPREF1058_RS0119660 0.53 +1.2
694,298 - HMPREF1058_RS0119660 0.53 +0.2
694,330 + HMPREF1058_RS0119660 0.57 -1.9
694,379 + HMPREF1058_RS0119660 0.64 -1.9
694,380 - HMPREF1058_RS0119660 0.64 +0.1
694,380 - HMPREF1058_RS0119660 0.64 +0.1
694,380 - HMPREF1058_RS0119660 0.64 +0.3
694,464 + HMPREF1058_RS0119660 0.74 -1.0
694,537 - HMPREF1058_RS0119660 0.83 -0.7
694,537 - HMPREF1058_RS0119660 0.83 +1.3
694,540 - HMPREF1058_RS0119660 0.84 -0.1
694,588 + HMPREF1058_RS0119660 0.90 -0.9
694,588 + HMPREF1058_RS0119660 0.90 -1.3
694,589 - HMPREF1058_RS0119660 0.90 -0.0
694,600 - -0.3
694,600 - -0.1
694,642 - +0.1
694,646 - -0.2
694,668 - -0.2
694,682 + -4.5
694,683 - -1.3
694,725 - +0.3
694,725 - +0.1
694,745 + -3.5
694,847 - +0.4
694,848 + -3.0
694,849 - +0.0
694,849 - +0.4
694,892 + -3.3
694,902 + HMPREF1058_RS10295 0.11 -2.2
694,977 + HMPREF1058_RS10295 0.27 -2.5
695,166 - HMPREF1058_RS10295 0.67 -0.9
695,371 + HMPREF1058_RS10290 0.18 -1.3
695,395 + HMPREF1058_RS10290 0.26 -2.3
695,517 + HMPREF1058_RS10290 0.66 -2.1
695,517 + HMPREF1058_RS10290 0.66 -1.6
695,537 + HMPREF1058_RS10290 0.72 -2.8
695,537 + HMPREF1058_RS10290 0.72 -3.6
695,538 - HMPREF1058_RS10290 0.73 +0.2
695,547 - HMPREF1058_RS10290 0.75 +0.2
695,606 + -3.6
695,617 + -2.8
695,625 - -0.3
695,658 + HMPREF1058_RS10285 0.14 -3.0
695,663 - HMPREF1058_RS10285 0.16 +0.1
695,691 + HMPREF1058_RS10285 0.26 -2.8
695,767 - HMPREF1058_RS10285 0.52 +0.2
695,848 - HMPREF1058_RS10285 0.81 -0.4
695,858 + HMPREF1058_RS10285 0.84 -2.9
695,858 + HMPREF1058_RS10285 0.84 -4.6
695,859 - HMPREF1058_RS10285 0.85 +0.7
695,883 + -3.8
695,907 - -0.3
695,912 + -2.1
695,912 + -3.6
695,922 + -3.1
695,923 - +0.3
695,923 - +0.3
695,926 + -1.9
695,927 - -0.3
695,928 + -2.0
695,929 - +0.3
695,957 - -0.0
696,002 + -2.0
696,002 + -1.6
696,053 + -2.3
696,054 - -0.5
696,085 + -4.4
696,111 + -3.3
696,111 + -3.8
696,112 - -0.1
696,199 - -2.5
696,305 - -2.2

Or see this region's nucleotide sequence