Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse13; day1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS09755 and HMPREF1058_RS09750 are separated by 25 nucleotides HMPREF1058_RS09750 and HMPREF1058_RS09745 overlap by 8 nucleotides
HMPREF1058_RS09755: HMPREF1058_RS09755 - YfhO family protein, at 802,043 to 804,535
_RS09755
HMPREF1058_RS09750: HMPREF1058_RS09750 - glycosyltransferase, at 804,561 to 805,307
_RS09750
HMPREF1058_RS09745: HMPREF1058_RS09745 - glycosyltransferase, at 805,300 to 806,562
_RS09745
Position (kb) 804
805
806 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 804.592 kb on - strand at 804.601 kb on - strand at 804.698 kb on - strand, within HMPREF1058_RS09750 at 804.843 kb on + strand, within HMPREF1058_RS09750 at 804.902 kb on + strand, within HMPREF1058_RS09750 at 804.904 kb on + strand, within HMPREF1058_RS09750 at 804.949 kb on - strand, within HMPREF1058_RS09750 at 804.984 kb on + strand, within HMPREF1058_RS09750 at 805.001 kb on + strand, within HMPREF1058_RS09750 at 805.002 kb on - strand, within HMPREF1058_RS09750 at 805.124 kb on + strand, within HMPREF1058_RS09750 at 805.125 kb on - strand, within HMPREF1058_RS09750 at 805.136 kb on - strand, within HMPREF1058_RS09750 at 805.136 kb on - strand, within HMPREF1058_RS09750 at 805.187 kb on + strand, within HMPREF1058_RS09750 at 805.190 kb on - strand, within HMPREF1058_RS09750 at 805.243 kb on - strand at 805.269 kb on - strand at 805.340 kb on + strand at 805.341 kb on - strand at 805.515 kb on + strand, within HMPREF1058_RS09745 at 805.572 kb on + strand, within HMPREF1058_RS09745 at 805.579 kb on + strand, within HMPREF1058_RS09745 at 805.592 kb on - strand, within HMPREF1058_RS09745 at 805.610 kb on - strand, within HMPREF1058_RS09745 at 805.658 kb on + strand, within HMPREF1058_RS09745 at 805.659 kb on - strand, within HMPREF1058_RS09745 at 805.674 kb on + strand, within HMPREF1058_RS09745 at 805.697 kb on + strand, within HMPREF1058_RS09745 at 805.698 kb on - strand, within HMPREF1058_RS09745 at 805.791 kb on - strand, within HMPREF1058_RS09745 at 805.981 kb on + strand, within HMPREF1058_RS09745 at 806.000 kb on - strand, within HMPREF1058_RS09745 at 806.050 kb on - strand, within HMPREF1058_RS09745 at 806.055 kb on - strand, within HMPREF1058_RS09745 at 806.115 kb on - strand, within HMPREF1058_RS09745 at 806.163 kb on + strand, within HMPREF1058_RS09745 at 806.163 kb on + strand, within HMPREF1058_RS09745 at 806.205 kb on + strand, within HMPREF1058_RS09745 at 806.233 kb on - strand, within HMPREF1058_RS09745 at 806.233 kb on - strand, within HMPREF1058_RS09745 at 806.233 kb on - strand, within HMPREF1058_RS09745 at 806.233 kb on - strand, within HMPREF1058_RS09745
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse13; day1 remove 804,592 - -1.7 804,601 - -1.0 804,698 - HMPREF1058_RS09750 0.18 -1.5 804,843 + HMPREF1058_RS09750 0.38 -1.6 804,902 + HMPREF1058_RS09750 0.46 -0.7 804,904 + HMPREF1058_RS09750 0.46 -0.8 804,949 - HMPREF1058_RS09750 0.52 -1.7 804,984 + HMPREF1058_RS09750 0.57 -2.0 805,001 + HMPREF1058_RS09750 0.59 -2.6 805,002 - HMPREF1058_RS09750 0.59 -1.0 805,124 + HMPREF1058_RS09750 0.75 +0.3 805,125 - HMPREF1058_RS09750 0.76 -0.2 805,136 - HMPREF1058_RS09750 0.77 -1.5 805,136 - HMPREF1058_RS09750 0.77 -1.6 805,187 + HMPREF1058_RS09750 0.84 -1.6 805,190 - HMPREF1058_RS09750 0.84 -3.6 805,243 - -1.7 805,269 - -1.8 805,340 + -1.3 805,341 - -0.9 805,515 + HMPREF1058_RS09745 0.17 -1.1 805,572 + HMPREF1058_RS09745 0.22 -1.2 805,579 + HMPREF1058_RS09745 0.22 -1.6 805,592 - HMPREF1058_RS09745 0.23 -0.5 805,610 - HMPREF1058_RS09745 0.25 -0.9 805,658 + HMPREF1058_RS09745 0.28 -1.0 805,659 - HMPREF1058_RS09745 0.28 +0.7 805,674 + HMPREF1058_RS09745 0.30 -2.2 805,697 + HMPREF1058_RS09745 0.31 -1.2 805,698 - HMPREF1058_RS09745 0.32 +0.3 805,791 - HMPREF1058_RS09745 0.39 -1.7 805,981 + HMPREF1058_RS09745 0.54 -1.6 806,000 - HMPREF1058_RS09745 0.55 -1.5 806,050 - HMPREF1058_RS09745 0.59 -0.5 806,055 - HMPREF1058_RS09745 0.60 +0.1 806,115 - HMPREF1058_RS09745 0.65 -1.4 806,163 + HMPREF1058_RS09745 0.68 -0.9 806,163 + HMPREF1058_RS09745 0.68 -1.6 806,205 + HMPREF1058_RS09745 0.72 -0.5 806,233 - HMPREF1058_RS09745 0.74 -0.7 806,233 - HMPREF1058_RS09745 0.74 -1.1 806,233 - HMPREF1058_RS09745 0.74 -1.3 806,233 - HMPREF1058_RS09745 0.74 -0.4
Or see this region's nucleotide sequence