Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse13; day1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS09680 and HMPREF1058_RS09675 are separated by 66 nucleotides HMPREF1058_RS09675 and HMPREF1058_RS09670 are separated by 32 nucleotides
HMPREF1058_RS09680: HMPREF1058_RS09680 - site-specific tyrosine recombinase XerD, at 822,963 to 823,904
_RS09680
HMPREF1058_RS09675: HMPREF1058_RS09675 - type II 3-dehydroquinate dehydratase, at 823,971 to 824,393
_RS09675
HMPREF1058_RS09670: HMPREF1058_RS09670 - pyruvate kinase, at 824,426 to 825,889
_RS09670
Position (kb) 823
824
825 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1 at 822.983 kb on + strand at 823.039 kb on - strand at 823.055 kb on + strand at 823.100 kb on + strand, within HMPREF1058_RS09680 at 823.100 kb on + strand, within HMPREF1058_RS09680 at 823.321 kb on + strand, within HMPREF1058_RS09680 at 823.355 kb on + strand, within HMPREF1058_RS09680 at 823.377 kb on - strand, within HMPREF1058_RS09680 at 823.469 kb on - strand, within HMPREF1058_RS09680 at 823.543 kb on - strand, within HMPREF1058_RS09680 at 823.810 kb on + strand at 823.810 kb on + strand at 823.811 kb on - strand at 823.819 kb on - strand at 823.856 kb on - strand at 823.959 kb on + strand at 823.964 kb on + strand at 823.966 kb on + strand at 823.997 kb on + strand at 824.078 kb on + strand, within HMPREF1058_RS09675 at 824.193 kb on + strand, within HMPREF1058_RS09675 at 824.195 kb on + strand, within HMPREF1058_RS09675 at 824.201 kb on + strand, within HMPREF1058_RS09675 at 824.201 kb on + strand, within HMPREF1058_RS09675 at 824.201 kb on + strand, within HMPREF1058_RS09675 at 824.400 kb on + strand at 824.409 kb on + strand at 824.409 kb on + strand at 824.512 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse13; day1 remove 822,983 + -0.9 823,039 - -1.6 823,055 + -0.9 823,100 + HMPREF1058_RS09680 0.15 -0.2 823,100 + HMPREF1058_RS09680 0.15 -0.3 823,321 + HMPREF1058_RS09680 0.38 -0.6 823,355 + HMPREF1058_RS09680 0.42 -2.0 823,377 - HMPREF1058_RS09680 0.44 -1.9 823,469 - HMPREF1058_RS09680 0.54 +0.0 823,543 - HMPREF1058_RS09680 0.62 -1.2 823,810 + -1.3 823,810 + -0.9 823,811 - -0.9 823,819 - -1.6 823,856 - -2.7 823,959 + +0.1 823,964 + +0.3 823,966 + -0.1 823,997 + -4.7 824,078 + HMPREF1058_RS09675 0.25 -4.7 824,193 + HMPREF1058_RS09675 0.52 -2.5 824,195 + HMPREF1058_RS09675 0.53 -2.0 824,201 + HMPREF1058_RS09675 0.54 -6.1 824,201 + HMPREF1058_RS09675 0.54 -5.2 824,201 + HMPREF1058_RS09675 0.54 -5.3 824,400 + -0.4 824,409 + -0.3 824,409 + -0.3 824,512 + -2.9
Or see this region's nucleotide sequence