Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse13; day1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS07255 and HMPREF1058_RS07250 are separated by 6 nucleotides HMPREF1058_RS07250 and HMPREF1058_RS07245 are separated by 171 nucleotides HMPREF1058_RS07245 and HMPREF1058_RS07240 are separated by 238 nucleotides HMPREF1058_RS07240 and HMPREF1058_RS07235 are separated by 179 nucleotides
HMPREF1058_RS07255: HMPREF1058_RS07255 - TlpA family protein disulfide reductase, at 278,375 to 278,917
_RS07255
HMPREF1058_RS07250: HMPREF1058_RS07250 - N-acetylmuramoyl-L-alanine amidase, at 278,924 to 279,730
_RS07250
HMPREF1058_RS07245: HMPREF1058_RS07245 - Rne/Rng family ribonuclease, at 279,902 to 281,476
_RS07245
HMPREF1058_RS07240: HMPREF1058_RS07240 - integration host factor subunit beta, at 281,715 to 281,990
_RS07240
HMPREF1058_RS07235: HMPREF1058_RS07235 - A/G-specific adenine glycosylase, at 282,170 to 283,228
_RS07235
Position (kb) 279
280
281
282 Strain fitness (log2 ratio) -2
-1
0
1 at 278.941 kb on - strand at 278.956 kb on - strand at 279.029 kb on + strand, within HMPREF1058_RS07250 at 279.029 kb on + strand, within HMPREF1058_RS07250 at 279.035 kb on - strand, within HMPREF1058_RS07250 at 279.035 kb on - strand, within HMPREF1058_RS07250 at 279.047 kb on - strand, within HMPREF1058_RS07250 at 279.162 kb on - strand, within HMPREF1058_RS07250 at 279.169 kb on + strand, within HMPREF1058_RS07250 at 279.218 kb on - strand, within HMPREF1058_RS07250 at 279.221 kb on - strand, within HMPREF1058_RS07250 at 279.221 kb on - strand, within HMPREF1058_RS07250 at 279.301 kb on + strand, within HMPREF1058_RS07250 at 279.397 kb on + strand, within HMPREF1058_RS07250 at 279.398 kb on - strand, within HMPREF1058_RS07250 at 279.398 kb on - strand, within HMPREF1058_RS07250 at 279.448 kb on + strand, within HMPREF1058_RS07250 at 279.448 kb on + strand, within HMPREF1058_RS07250 at 279.499 kb on + strand, within HMPREF1058_RS07250 at 279.516 kb on - strand, within HMPREF1058_RS07250 at 279.576 kb on + strand, within HMPREF1058_RS07250 at 279.577 kb on - strand, within HMPREF1058_RS07250 at 279.587 kb on - strand, within HMPREF1058_RS07250 at 279.714 kb on - strand at 279.733 kb on + strand at 279.786 kb on + strand at 279.846 kb on + strand at 279.849 kb on + strand at 280.074 kb on + strand, within HMPREF1058_RS07245 at 280.075 kb on - strand, within HMPREF1058_RS07245 at 280.075 kb on - strand, within HMPREF1058_RS07245 at 280.087 kb on - strand, within HMPREF1058_RS07245 at 280.094 kb on - strand, within HMPREF1058_RS07245 at 280.104 kb on - strand, within HMPREF1058_RS07245 at 281.561 kb on + strand at 281.680 kb on + strand at 281.701 kb on - strand at 281.717 kb on - strand at 281.735 kb on - strand at 281.736 kb on - strand at 282.024 kb on - strand at 282.144 kb on - strand at 282.144 kb on - strand at 282.157 kb on - strand at 282.279 kb on + strand, within HMPREF1058_RS07235 at 282.280 kb on - strand, within HMPREF1058_RS07235 at 282.311 kb on + strand, within HMPREF1058_RS07235 at 282.314 kb on + strand, within HMPREF1058_RS07235 at 282.314 kb on + strand, within HMPREF1058_RS07235 at 282.315 kb on - strand, within HMPREF1058_RS07235 at 282.315 kb on - strand, within HMPREF1058_RS07235 at 282.476 kb on + strand, within HMPREF1058_RS07235 at 282.476 kb on + strand, within HMPREF1058_RS07235
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse13; day1 remove 278,941 - +0.7 278,956 - -1.3 279,029 + HMPREF1058_RS07250 0.13 +0.4 279,029 + HMPREF1058_RS07250 0.13 -1.2 279,035 - HMPREF1058_RS07250 0.14 +0.3 279,035 - HMPREF1058_RS07250 0.14 -0.5 279,047 - HMPREF1058_RS07250 0.15 -0.4 279,162 - HMPREF1058_RS07250 0.29 -0.5 279,169 + HMPREF1058_RS07250 0.30 +0.1 279,218 - HMPREF1058_RS07250 0.36 -0.1 279,221 - HMPREF1058_RS07250 0.37 +1.0 279,221 - HMPREF1058_RS07250 0.37 -0.1 279,301 + HMPREF1058_RS07250 0.47 +0.6 279,397 + HMPREF1058_RS07250 0.59 -0.2 279,398 - HMPREF1058_RS07250 0.59 -0.8 279,398 - HMPREF1058_RS07250 0.59 +0.0 279,448 + HMPREF1058_RS07250 0.65 +0.1 279,448 + HMPREF1058_RS07250 0.65 -0.0 279,499 + HMPREF1058_RS07250 0.71 +0.6 279,516 - HMPREF1058_RS07250 0.73 -0.6 279,576 + HMPREF1058_RS07250 0.81 +0.2 279,577 - HMPREF1058_RS07250 0.81 +0.3 279,587 - HMPREF1058_RS07250 0.82 +0.5 279,714 - -0.3 279,733 + -0.2 279,786 + +0.5 279,846 + +0.0 279,849 + -0.1 280,074 + HMPREF1058_RS07245 0.11 -2.3 280,075 - HMPREF1058_RS07245 0.11 -2.0 280,075 - HMPREF1058_RS07245 0.11 -2.5 280,087 - HMPREF1058_RS07245 0.12 -1.3 280,094 - HMPREF1058_RS07245 0.12 -1.5 280,104 - HMPREF1058_RS07245 0.13 -2.3 281,561 + -0.4 281,680 + +0.5 281,701 - +1.4 281,717 - -0.4 281,735 - +0.1 281,736 - +0.2 282,024 - -0.4 282,144 - +0.0 282,144 - +0.0 282,157 - +0.0 282,279 + HMPREF1058_RS07235 0.10 -0.5 282,280 - HMPREF1058_RS07235 0.10 +0.1 282,311 + HMPREF1058_RS07235 0.13 +0.1 282,314 + HMPREF1058_RS07235 0.14 +1.2 282,314 + HMPREF1058_RS07235 0.14 +0.4 282,315 - HMPREF1058_RS07235 0.14 +0.3 282,315 - HMPREF1058_RS07235 0.14 +0.2 282,476 + HMPREF1058_RS07235 0.29 +0.0 282,476 + HMPREF1058_RS07235 0.29 +0.2
Or see this region's nucleotide sequence