Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse13; day1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS01125 and HMPREF1058_RS01120 are separated by 134 nucleotides
HMPREF1058_RS01125: HMPREF1058_RS01125 - Rpn family recombination-promoting nuclease/putative transposase, at 204,877 to 205,755
_RS01125
HMPREF1058_RS01120: HMPREF1058_RS01120 - hypothetical protein, at 205,890 to 206,114
_RS01120
Position (kb) 205
206
207 Strain fitness (log2 ratio) -2
-1
0
1
2 at 204.944 kb on - strand at 205.073 kb on + strand, within HMPREF1058_RS01125 at 205.076 kb on + strand, within HMPREF1058_RS01125 at 205.076 kb on + strand, within HMPREF1058_RS01125 at 205.199 kb on - strand, within HMPREF1058_RS01125 at 205.244 kb on + strand, within HMPREF1058_RS01125 at 205.258 kb on + strand, within HMPREF1058_RS01125 at 205.397 kb on - strand, within HMPREF1058_RS01125 at 205.397 kb on - strand, within HMPREF1058_RS01125 at 205.398 kb on + strand, within HMPREF1058_RS01125 at 205.410 kb on - strand, within HMPREF1058_RS01125 at 205.410 kb on - strand, within HMPREF1058_RS01125 at 205.410 kb on - strand, within HMPREF1058_RS01125 at 205.417 kb on - strand, within HMPREF1058_RS01125 at 205.430 kb on + strand, within HMPREF1058_RS01125 at 205.430 kb on + strand, within HMPREF1058_RS01125 at 205.577 kb on + strand, within HMPREF1058_RS01125 at 205.741 kb on - strand at 205.823 kb on - strand at 205.864 kb on + strand at 205.864 kb on + strand at 205.912 kb on + strand at 205.913 kb on - strand, within HMPREF1058_RS01120 at 205.914 kb on + strand, within HMPREF1058_RS01120 at 205.947 kb on + strand, within HMPREF1058_RS01120 at 205.949 kb on + strand, within HMPREF1058_RS01120 at 205.961 kb on - strand, within HMPREF1058_RS01120 at 205.963 kb on - strand, within HMPREF1058_RS01120 at 206.005 kb on + strand, within HMPREF1058_RS01120 at 206.006 kb on - strand, within HMPREF1058_RS01120 at 206.006 kb on - strand, within HMPREF1058_RS01120 at 206.041 kb on - strand, within HMPREF1058_RS01120 at 206.049 kb on + strand, within HMPREF1058_RS01120 at 206.084 kb on + strand, within HMPREF1058_RS01120 at 206.115 kb on - strand at 206.131 kb on - strand at 206.136 kb on - strand at 206.136 kb on - strand at 206.136 kb on - strand at 206.138 kb on - strand at 206.141 kb on + strand at 206.141 kb on + strand at 206.188 kb on - strand at 206.203 kb on - strand at 206.214 kb on - strand at 206.275 kb on - strand at 206.275 kb on - strand at 206.285 kb on - strand at 206.308 kb on - strand at 206.330 kb on - strand at 206.376 kb on - strand at 206.462 kb on + strand at 206.524 kb on + strand at 206.559 kb on + strand at 206.593 kb on + strand at 206.620 kb on - strand at 206.670 kb on + strand at 206.671 kb on - strand at 206.678 kb on - strand at 206.696 kb on - strand at 206.738 kb on + strand at 206.738 kb on + strand at 206.739 kb on - strand at 206.739 kb on - strand at 206.760 kb on + strand at 206.828 kb on + strand at 206.894 kb on + strand at 206.995 kb on + strand at 207.018 kb on - strand at 207.061 kb on - strand at 207.061 kb on - strand at 207.074 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse13; day1 remove 204,944 - +0.9 205,073 + HMPREF1058_RS01125 0.22 +1.8 205,076 + HMPREF1058_RS01125 0.23 -1.2 205,076 + HMPREF1058_RS01125 0.23 +0.3 205,199 - HMPREF1058_RS01125 0.37 +0.4 205,244 + HMPREF1058_RS01125 0.42 -0.7 205,258 + HMPREF1058_RS01125 0.43 +0.5 205,397 - HMPREF1058_RS01125 0.59 +0.3 205,397 - HMPREF1058_RS01125 0.59 +0.1 205,398 + HMPREF1058_RS01125 0.59 +0.5 205,410 - HMPREF1058_RS01125 0.61 +1.8 205,410 - HMPREF1058_RS01125 0.61 +0.8 205,410 - HMPREF1058_RS01125 0.61 -0.4 205,417 - HMPREF1058_RS01125 0.61 +0.3 205,430 + HMPREF1058_RS01125 0.63 +0.1 205,430 + HMPREF1058_RS01125 0.63 +1.0 205,577 + HMPREF1058_RS01125 0.80 -1.1 205,741 - +0.1 205,823 - -0.0 205,864 + -0.9 205,864 + +0.3 205,912 + -0.1 205,913 - HMPREF1058_RS01120 0.10 -0.2 205,914 + HMPREF1058_RS01120 0.11 +0.6 205,947 + HMPREF1058_RS01120 0.25 -0.2 205,949 + HMPREF1058_RS01120 0.26 +2.0 205,961 - HMPREF1058_RS01120 0.32 +1.9 205,963 - HMPREF1058_RS01120 0.32 -0.7 206,005 + HMPREF1058_RS01120 0.51 -0.2 206,006 - HMPREF1058_RS01120 0.52 -1.0 206,006 - HMPREF1058_RS01120 0.52 +2.0 206,041 - HMPREF1058_RS01120 0.67 +1.0 206,049 + HMPREF1058_RS01120 0.71 -0.1 206,084 + HMPREF1058_RS01120 0.86 -0.0 206,115 - -0.1 206,131 - -0.9 206,136 - -0.2 206,136 - +0.3 206,136 - +2.1 206,138 - +1.4 206,141 + -0.5 206,141 + +0.7 206,188 - -0.9 206,203 - +1.4 206,214 - +0.6 206,275 - +0.2 206,275 - +0.1 206,285 - -0.3 206,308 - +0.8 206,330 - -1.9 206,376 - +1.0 206,462 + +0.1 206,524 + +0.0 206,559 + +0.3 206,593 + +0.5 206,620 - +0.3 206,670 + +0.0 206,671 - +0.1 206,678 - +1.4 206,696 - +0.6 206,738 + -0.4 206,738 + +0.3 206,739 - +1.6 206,739 - +0.3 206,760 + -1.5 206,828 + -0.5 206,894 + +0.8 206,995 + +1.6 207,018 - -1.1 207,061 - +0.6 207,061 - +0.5 207,074 - -0.7
Or see this region's nucleotide sequence