Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv3616c

Experiment: 7H9 with Streptomycin 0.178 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	7H9 with Streptomycin 0.178 ug/mL
4,054,241	+		Rv3614c	0.18	-0.6
4,054,267	+		Rv3614c	0.23	-0.9
4,054,267	+		Rv3614c	0.23	-0.1
4,054,268	-		Rv3614c	0.23	+0.9
4,054,271	+		Rv3614c	0.23	-0.7
4,054,272	-		Rv3614c	0.23	+0.2
4,054,272	-		Rv3614c	0.23	-1.3
4,054,335	+		Rv3614c	0.35	-0.0
4,054,600	+		Rv3614c	0.83	+0.9
4,054,818	-				-0.1
4,054,818	-				+1.2
4,054,862	+		Rv3615c	0.16	-0.2
4,054,863	-		Rv3615c	0.16	-0.4
4,054,865	-		Rv3615c	0.17	-0.1
4,054,866	+		Rv3615c	0.17	+0.9
4,054,866	+		Rv3615c	0.17	+0.0
4,054,867	-		Rv3615c	0.18	-2.6
4,054,867	-		Rv3615c	0.18	+0.9
4,054,951	+		Rv3615c	0.45	+0.5
4,054,951	+		Rv3615c	0.45	+1.5
4,054,951	+		Rv3615c	0.45	+0.1
4,054,959	+		Rv3615c	0.47	-0.6
4,054,960	-		Rv3615c	0.47	-0.1
4,054,960	-		Rv3615c	0.47	-0.0
4,054,960	-		Rv3615c	0.47	-0.7
4,055,082	+		Rv3615c	0.87	-0.4
4,055,083	-		Rv3615c	0.87	+0.2
4,055,083	-		Rv3615c	0.87	+0.2
4,055,143	+				-0.7
4,055,144	-				-0.3
4,055,297	+				+0.1
4,055,371	-		Rv3616c	0.15	+0.6
4,055,924	+		Rv3616c	0.62	+0.1
4,055,925	-		Rv3616c	0.62	+0.2
4,055,944	+		Rv3616c	0.63	-0.7
4,055,944	+		Rv3616c	0.63	-0.2
4,055,945	-		Rv3616c	0.63	+0.0
4,055,945	-		Rv3616c	0.63	+0.6
4,055,945	-		Rv3616c	0.63	-0.4
4,055,945	-		Rv3616c	0.63	+0.4
4,056,014	+		Rv3616c	0.69	+1.0
4,056,014	+		Rv3616c	0.69	-0.1
4,056,015	-		Rv3616c	0.69	+0.9
4,056,015	-		Rv3616c	0.69	+0.2
4,056,189	-		Rv3616c	0.84	+0.7
4,056,189	-		Rv3616c	0.84	+1.0
4,056,209	-		Rv3616c	0.86	-0.3
4,056,264	-				+1.5
4,056,268	+				+0.3
4,056,269	-				+0.0
4,056,269	-				+0.5
4,056,323	+				+0.1
4,056,324	-				+0.2
4,056,324	-				+0.3
4,056,386	+				+0.4
4,056,413	+				-0.1
4,056,413	+				+3.5
4,056,446	-				+0.3
4,056,610	+				-0.1
4,056,672	+				+0.7
4,056,696	+				-0.2
4,056,697	-				-0.4
4,056,698	+				+0.9
4,056,698	+				-0.1
4,056,700	+				-0.3
4,056,701	-				-1.9
4,056,701	-				+0.4
4,056,701	-				+3.7
4,056,701	-				+0.2
4,057,052	+				+0.4
4,057,198	+				+0.4
4,057,198	+				+0.2
4,057,253	+				+0.1
4,057,253	+				+0.0
4,057,254	-				-0.7
4,057,275	+				+0.9
4,057,275	+				+0.7
4,057,275	+				+0.3
4,057,320	+				+1.2