Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv3433c

Experiment: 7H9 with Streptomycin 0.178 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	7H9 with Streptomycin 0.178 ug/mL
3,850,839	-		Rv3432c	0.34	-0.4
3,850,910	+		Rv3432c	0.39	-0.0
3,850,922	+		Rv3432c	0.40	+0.1
3,851,032	+		Rv3432c	0.48	-0.0
3,851,032	+		Rv3432c	0.48	+1.0
3,851,033	-		Rv3432c	0.48	+0.8
3,851,112	+		Rv3432c	0.54	-0.6
3,851,113	-		Rv3432c	0.54	+0.9
3,851,114	+		Rv3432c	0.54	-0.6
3,851,114	+		Rv3432c	0.54	-0.3
3,851,114	+		Rv3432c	0.54	+0.5
3,851,115	-		Rv3432c	0.54	+1.9
3,851,115	-		Rv3432c	0.54	+0.0
3,851,115	-		Rv3432c	0.54	-0.4
3,851,193	-		Rv3432c	0.59	-0.9
3,851,499	+		Rv3432c	0.81	-0.4
3,851,595	+		Rv3432c	0.88	+0.9
3,851,595	+		Rv3432c	0.88	-0.5
3,851,630	+				-0.8
3,851,706	-				+0.6
3,851,706	-				-0.4
3,851,793	+				+0.4
3,851,793	+				-1.6
3,851,794	-				-0.4
3,851,794	-				+0.3
3,852,027	+		Rv3433c	0.17	-1.1
3,852,531	+		Rv3433c	0.52	-0.7
3,852,532	-		Rv3433c	0.52	-1.1
3,852,532	-		Rv3433c	0.52	-1.5
3,852,581	-		Rv3433c	0.55	-0.7
3,853,200	+				+0.3
3,853,200	+				-0.4
3,853,201	-				-0.5
3,853,201	-				-0.4
3,853,454	-		Rv3434c	0.33	-1.9
3,853,454	-		Rv3434c	0.33	-1.5
3,853,454	-		Rv3434c	0.33	-0.7
3,853,454	-		Rv3434c	0.33	-1.7
3,853,454	-		Rv3434c	0.33	-0.4
3,853,487	-		Rv3434c	0.38	-0.0
3,853,573	+		Rv3434c	0.50	-0.1
3,853,573	+		Rv3434c	0.50	+0.5
3,853,573	+		Rv3434c	0.50	-0.7
3,853,574	-		Rv3434c	0.50	-0.1
3,853,847	-		Rv3434c	0.89	-0.3
3,853,940	+				-0.2
3,853,941	-				+0.5
3,853,941	-				+0.3
3,853,941	-				+1.5
3,853,991	+				-0.2
3,853,991	+				+0.0
3,853,991	+				-0.7
3,853,991	+				-0.1
3,853,992	-				+0.1
3,853,992	-				-1.0
3,853,992	-				-0.5
3,853,992	-				+0.9
3,854,032	+		Rv3435c	0.11	+0.2
3,854,120	+		Rv3435c	0.21	+0.3
3,854,121	-		Rv3435c	0.21	-0.4