Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv3345c

Experiment: 7H9 with Streptomycin 0.178 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	7H9 with Streptomycin 0.178 ug/mL
3,737,592	+		Rv3344c	0.42	-0.0
3,737,592	+		Rv3344c	0.42	-0.2
3,737,592	+		Rv3344c	0.42	-0.0
3,737,592	+		Rv3344c	0.42	+0.1
3,737,592	+		Rv3344c	0.42	-0.9
3,737,593	-		Rv3344c	0.42	+0.5
3,739,367	+		Rv3345c	0.26	+1.2
3,739,573	+		Rv3345c	0.31	+0.6
3,740,018	+		Rv3345c	0.40	+0.2
3,740,055	-		Rv3345c	0.41	-0.1
3,740,210	-		Rv3345c	0.44	-0.3
3,740,246	-		Rv3345c	0.45	+0.1
3,740,320	+		Rv3345c	0.47	+0.8
3,740,719	+		Rv3345c	0.55	+1.2
3,741,146	-		Rv3345c	0.65	+0.4
3,741,307	+		Rv3345c	0.68	+0.3
3,741,307	+		Rv3345c	0.68	+0.3
3,741,439	+		Rv3345c	0.71	-0.6
3,741,439	+		Rv3345c	0.71	+0.1
3,741,491	+		Rv3345c	0.72	+2.0
3,741,491	+		Rv3345c	0.72	-0.2
3,741,491	+		Rv3345c	0.72	+0.5
3,741,492	-		Rv3345c	0.72	+0.2
3,741,492	-		Rv3345c	0.72	-0.0
3,741,608	+		Rv3345c	0.75	+0.0
3,741,609	-		Rv3345c	0.75	+1.0
3,741,808	+		Rv3345c	0.79	+0.9
3,742,016	+		Rv3345c	0.84	+0.2
3,742,016	+		Rv3345c	0.84	+0.4
3,742,016	+		Rv3345c	0.84	+0.3
3,742,016	+		Rv3345c	0.84	-0.4
3,742,018	+		Rv3345c	0.84	-0.3
3,742,018	+		Rv3345c	0.84	-0.4
3,742,018	+		Rv3345c	0.84	+0.4
3,742,019	-		Rv3345c	0.84	-0.0
3,742,019	-		Rv3345c	0.84	+1.1
3,742,340	-				+0.3
3,742,340	-				-0.1
3,742,512	+				+0.3
3,742,512	+				-0.3
3,742,512	+				+0.0
3,742,513	-				+0.1
3,742,513	-				+0.0
3,742,513	-				+2.5
3,742,587	+				+0.9
3,742,587	+				+0.0
3,742,588	-				+0.2
3,742,924	+				-0.1
3,742,924	+				+0.6
3,742,924	+				-0.1
3,742,924	+				-0.7
3,742,925	-				+0.9
3,742,965	+				+1.0
3,743,001	+				-0.2
3,743,043	+				-0.5
3,743,044	-				-0.1
3,743,061	+				+0.0
3,743,061	+				-0.5
3,743,119	+				+0.5
3,743,119	+				+0.9
3,743,120	-				+1.9
3,743,120	-				+0.5
3,743,190	-				+0.9
3,743,190	-				-0.7
3,743,234	-		Rv3346c	0.14	+0.9
3,743,234	-		Rv3346c	0.14	-0.3
3,743,234	-		Rv3346c	0.14	+1.6
3,743,525	+				+0.7
3,743,525	+				+1.0
3,743,526	-				+2.4
3,743,526	-				+0.2
3,743,526	-				+0.9
3,743,602	+				+0.7
3,743,602	+				+0.4
3,743,602	+				+0.6
3,743,603	-				+0.6
3,743,603	-				-0.9
3,743,603	-				+0.1
3,743,603	-				+1.9
3,743,603	-				-0.2
3,743,603	-				+0.4
3,743,610	-				+0.3
3,743,764	+				+1.0
3,743,764	+				-1.4
3,743,764	+				+0.5
3,743,764	+				+0.4
3,743,765	-				+0.9
3,743,765	-				+0.1