Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv2929

Experiment: 7H9 with Streptomycin 0.178 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	7H9 with Streptomycin 0.178 ug/mL
3,242,065	+				+0.2
3,242,066	-				-1.2
3,242,120	+				-1.1
3,242,121	-				-1.1
3,242,149	+				+0.1
3,242,149	+				-0.2
3,242,150	-				-0.7
3,242,150	-				-0.1
3,242,150	-				+0.4
3,242,150	-				+0.2
3,242,189	+				-0.4
3,242,189	+				-0.4
3,242,190	-				-0.7
3,242,190	-				+0.0
3,242,190	-				-1.4
3,242,190	-				-0.1
3,242,190	-				-1.9
3,242,190	-				-1.3
3,242,190	-				-0.2
3,242,222	+				-0.2
3,242,257	+				+0.7
3,242,292	-		Rv2928	0.12	-0.0
3,242,293	+		Rv2928	0.12	-0.2
3,242,327	+		Rv2928	0.16	+0.8
3,242,947	-				+0.3
3,242,947	-				+1.9
3,242,981	+				+0.3
3,242,981	+				-0.7
3,242,982	-				+0.1
3,242,985	+				-1.4
3,242,986	-				-0.6
3,242,986	-				-0.4
3,243,168	-		Rv2929	0.63	+0.8
3,243,168	-		Rv2929	0.63	+0.4
3,243,203	-		Rv2929	0.75	+0.3
3,243,203	-		Rv2929	0.75	+0.9
3,243,275	+				-0.0
3,243,275	+				+0.8
3,243,283	+				+0.3
3,243,283	+				-0.1
3,243,284	-				+0.3
3,243,356	+				-0.0
3,243,357	-				+1.3
3,243,357	-				+0.8
3,243,367	-				+1.7
3,243,408	-				+0.7
3,243,432	+				+0.1
3,243,432	+				+0.1
3,243,433	-				+0.4
3,243,433	-				+0.8
3,243,461	-				+1.7
3,243,461	-				+0.7
3,243,461	-				+1.2
3,243,461	-				+0.4
3,243,465	+				+0.2
3,243,465	+				-0.2
3,243,465	+				+0.1
3,243,465	+				-0.5
3,243,466	-				+1.9
3,243,466	-				+1.2
3,243,478	+				-1.1
3,243,479	-				+0.7
3,243,484	+				-0.2
3,243,485	-				+0.3
3,243,501	+				-0.3
3,243,502	-				+0.7
3,243,502	-				+0.2
3,243,502	-				+0.7
3,243,507	-				+0.8
3,243,559	-				+0.8
3,243,660	+				-0.3
3,243,660	+				-0.3
3,243,661	-				+0.6
3,243,661	-				+0.6
3,243,661	-				+0.6
3,243,661	-				+0.6
3,243,661	-				+0.7
3,243,688	+				-0.4
3,243,688	+				+0.7
3,243,689	-				+0.6
3,243,689	-				+0.1
3,243,689	-				+0.9
3,243,769	+				+0.8
3,243,770	-				+0.8
3,243,770	-				+0.6
3,243,770	-				-0.4
3,243,770	-				-0.1
3,243,771	+				+1.1
3,243,771	+				+0.2
3,243,771	+				+0.6
3,243,771	+				+1.6
3,243,771	+				+1.2
3,243,772	-				+0.6
3,243,772	-				+1.0
3,243,775	+				+1.1
3,243,775	+				-1.8
3,243,776	-				+1.5
3,243,776	-				-0.3
3,243,776	-				+0.5
3,243,776	-				+0.6
3,243,926	-		Rv2930	0.13	+0.7
3,243,992	-		Rv2930	0.17	+0.9
3,244,079	+		Rv2930	0.22	+0.4
3,244,087	+		Rv2930	0.22	+1.1
3,244,088	-		Rv2930	0.22	+0.6
3,244,125	-		Rv2930	0.24	+0.7
3,244,125	-		Rv2930	0.24	+0.2
3,244,210	+		Rv2930	0.29	+1.6
3,244,210	+		Rv2930	0.29	+1.0
3,244,211	-		Rv2930	0.29	+0.4
3,244,211	-		Rv2930	0.29	+0.5
3,244,230	+		Rv2930	0.30	+0.7