Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv1902c

Experiment: 7H9 with Streptomycin 0.178 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	7H9 with Streptomycin 0.178 ug/mL
2,148,038	+		Rv1901	0.29	+0.6
2,148,238	+		Rv1901	0.45	-0.0
2,148,238	+		Rv1901	0.45	+0.5
2,148,239	-		Rv1901	0.45	+0.5
2,148,239	-		Rv1901	0.45	-0.1
2,148,333	-		Rv1901	0.52	+0.5
2,148,409	+		Rv1901	0.58	-0.6
2,148,503	+		Rv1901	0.65	+0.3
2,148,504	-		Rv1901	0.65	+1.2
2,148,589	+		Rv1901	0.72	-0.1
2,148,613	+		Rv1901	0.74	-1.0
2,148,614	-		Rv1901	0.74	-0.6
2,148,618	+		Rv1901	0.74	-0.3
2,148,618	+		Rv1901	0.74	-1.4
2,148,882	+				+0.2
2,148,883	-				+0.9
2,148,953	-				+0.3
2,149,051	-				+0.2
2,149,177	-		Rv1902c	0.13	-0.7
2,149,177	-		Rv1902c	0.13	-0.2
2,149,214	+		Rv1902c	0.16	-1.4
2,149,220	-		Rv1902c	0.17	-1.2
2,149,298	-		Rv1902c	0.23	+0.5
2,149,298	-		Rv1902c	0.23	-0.2
2,149,298	-		Rv1902c	0.23	-1.1
2,149,353	-		Rv1902c	0.27	+0.0
2,149,406	+		Rv1902c	0.32	-0.6
2,149,406	+		Rv1902c	0.32	-0.3
2,149,406	+		Rv1902c	0.32	-0.2
2,149,472	+		Rv1902c	0.37	-0.5
2,149,472	+		Rv1902c	0.37	-0.2
2,149,472	+		Rv1902c	0.37	-1.0
2,149,472	+		Rv1902c	0.37	-0.2
2,149,472	+		Rv1902c	0.37	-0.8
2,149,473	-		Rv1902c	0.37	-0.7
2,149,603	+		Rv1902c	0.47	+0.2
2,149,604	-		Rv1902c	0.47	-0.4
2,149,604	-		Rv1902c	0.47	-0.1
2,149,604	-		Rv1902c	0.47	-0.2
2,149,604	-		Rv1902c	0.47	+0.4
2,149,604	-		Rv1902c	0.47	-0.7
2,149,604	-		Rv1902c	0.47	-0.3
2,149,607	+		Rv1902c	0.47	-0.6
2,149,842	-		Rv1902c	0.66	-0.9
2,149,946	+		Rv1902c	0.74	-0.3
2,149,947	-		Rv1902c	0.74	-0.0
2,150,015	+		Rv1902c	0.80	-0.4
2,150,016	-		Rv1902c	0.80	-0.3
2,150,016	-		Rv1902c	0.80	+0.7
2,150,171	+				+0.1
2,150,172	-				-0.1
2,150,192	+				-0.1
2,150,193	-				+0.4
2,150,232	+				-0.1
2,150,559	+		Rv1903	0.48	-0.6
2,150,559	+		Rv1903	0.48	-0.7
2,150,559	+		Rv1903	0.48	-0.0
2,150,559	+		Rv1903	0.48	-0.2
2,150,560	-		Rv1903	0.48	-1.3
2,150,560	-		Rv1903	0.48	-0.1
2,150,587	+		Rv1903	0.55	-0.2
2,150,587	+		Rv1903	0.55	-0.5
2,150,588	-		Rv1903	0.55	-0.1
2,150,588	-		Rv1903	0.55	-0.6
2,150,615	+		Rv1903	0.62	+0.8
2,150,766	+				+1.5
2,150,767	-				+0.4
2,150,767	-				-0.7
2,150,767	-				-0.1
2,150,797	+				-0.6
2,150,797	+				-0.6
2,150,798	-				+0.5
2,150,798	-				-0.2
2,150,798	-				-2.2
2,150,821	+				-1.5
2,150,822	-				+0.8
2,150,822	-				+0.5
2,150,822	-				-0.7
2,150,822	-				+0.0
2,150,827	+				-0.0
2,150,827	+				+1.9
2,150,905	+				+0.3
2,150,925	-				-0.9
2,150,925	-				-1.0
2,151,029	-		Rv1904	0.17	-0.4
2,151,212	+		Rv1904	0.60	+0.4
2,151,212	+		Rv1904	0.60	+0.0
2,151,212	+		Rv1904	0.60	-0.6
2,151,212	+		Rv1904	0.60	-1.1
2,151,213	-		Rv1904	0.60	+0.0
2,151,213	-		Rv1904	0.60	-0.8
2,151,213	-		Rv1904	0.60	-0.3
2,151,213	-		Rv1904	0.60	+1.1
2,151,262	+		Rv1904	0.71	+0.3
2,151,262	+		Rv1904	0.71	-1.2
2,151,263	-		Rv1904	0.72	+0.1
2,151,263	-		Rv1904	0.72	-0.1