Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv1553

Experiment: 7H9 with Streptomycin 0.178 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	7H9 with Streptomycin 0.178 ug/mL
1,758,465	-		Rv1552	0.45	-0.1
1,758,559	-		Rv1552	0.50	-0.8
1,758,596	+		Rv1552	0.52	+0.1
1,758,615	+		Rv1552	0.53	+0.9
1,758,666	+		Rv1552	0.56	-0.2
1,758,667	-		Rv1552	0.56	-0.4
1,758,795	+		Rv1552	0.64	-1.6
1,758,829	+		Rv1552	0.66	+0.4
1,758,985	-		Rv1552	0.74	-0.7
1,759,081	+		Rv1552	0.80	-1.7
1,759,086	-		Rv1552	0.80	-0.8
1,759,422	-				+0.1
1,759,422	-				+0.3
1,759,430	+				+0.1
1,759,430	+				+0.5
1,759,430	+				+0.0
1,759,431	-				-1.0
1,759,431	-				-1.1
1,759,431	-				+0.9
1,759,555	+		Rv1553	0.16	-0.0
1,759,555	+		Rv1553	0.16	-0.1
1,759,555	+		Rv1553	0.16	-0.1
1,759,555	+		Rv1553	0.16	-0.7
1,759,611	+		Rv1553	0.24	-0.3
1,759,629	+		Rv1553	0.26	-1.0
1,759,630	-		Rv1553	0.26	-1.7
1,759,681	+		Rv1553	0.33	-0.9
1,759,682	-		Rv1553	0.33	-0.0
1,759,686	-		Rv1553	0.34	-0.1
1,759,686	-		Rv1553	0.34	-0.2
1,759,882	-		Rv1553	0.60	+0.0
1,759,882	-		Rv1553	0.60	-0.8
1,759,973	-		Rv1553	0.72	-0.7
1,760,116	+				-0.3
1,760,229	+		Rv1554	0.14	+2.2
1,760,229	+		Rv1554	0.14	-0.4
1,760,229	+		Rv1554	0.14	-0.2
1,760,287	-		Rv1554	0.29	+0.3
1,760,300	-		Rv1554	0.33	+0.1
1,760,371	+		Rv1554	0.51	-0.5
1,760,372	-		Rv1554	0.52	-0.7
1,760,418	-		Rv1554	0.64	-0.4
1,760,923	+				-0.3
1,760,923	+				+0.1
1,760,924	-				+0.1
1,760,927	+				-0.2
1,760,927	+				-0.3
1,760,928	-				-0.4
1,760,996	+				-0.7
1,760,997	-				-0.9
1,761,001	+				+0.1
1,761,085	+		Rv1556	0.14	-0.4
1,761,085	+		Rv1556	0.14	-0.1
1,761,086	-		Rv1556	0.15	-0.9
1,761,118	+		Rv1556	0.20	-0.2