Experiment: 7H9 with Streptomycin 0.178 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0749 and Rv0749A are separated by 80 nucleotides Rv0749A and Rv0750 are separated by 158 nucleotides Rv0750 and Rv0751c are separated by 68 nucleotides Rv0751c and Rv0752c are separated by 10 nucleotides
Rv0749: Rv0749 - Possible toxin VapC31. Contains PIN domain., at 841,228 to 841,656
Rv0749
Rv0749A: Rv0749A - Hypothetical protein (fragment), at 841,737 to 841,874
Rv0749A
Rv0750: Rv0750 - Conserved hypothetical protein, at 842,033 to 842,278
Rv0750
Rv0751c: Rv0751c - Probable 3-hydroxyisobutyrate dehydrogenase MmsB (hibadh), at 842,347 to 843,231
Rv0751c
Rv0752c: Rv0752c - Probable acyl-CoA dehydrogenase FadE9, at 843,242 to 844,414
Rv0752c
Position (kb) 842
843
844 Strain fitness (log2 ratio) -1
0
1
2 at 841.544 kb on + strand, within Rv0749 at 841.568 kb on + strand, within Rv0749 at 841.568 kb on + strand, within Rv0749 at 841.672 kb on + strand at 841.738 kb on + strand at 841.739 kb on - strand at 841.996 kb on - strand at 842.021 kb on + strand at 842.021 kb on + strand at 842.021 kb on + strand at 842.021 kb on + strand at 842.022 kb on - strand at 842.022 kb on - strand at 842.043 kb on + strand at 842.044 kb on - strand at 842.348 kb on + strand at 842.791 kb on + strand, within Rv0751c at 843.008 kb on + strand, within Rv0751c at 843.008 kb on + strand, within Rv0751c at 843.211 kb on + strand at 843.211 kb on + strand at 843.212 kb on - strand at 843.243 kb on + strand at 843.372 kb on + strand, within Rv0752c at 843.912 kb on + strand, within Rv0752c at 843.912 kb on + strand, within Rv0752c at 843.913 kb on - strand, within Rv0752c
Per-strain Table
Position Strand Gene LocusTag Fraction 7H9 with Streptomycin 0.178 ug/mL remove 841,544 + Rv0749 0.74 -0.7 841,568 + Rv0749 0.79 -0.1 841,568 + Rv0749 0.79 -0.0 841,672 + -0.2 841,738 + -1.0 841,739 - +0.9 841,996 - +0.3 842,021 + +1.9 842,021 + -0.1 842,021 + +0.4 842,021 + +1.2 842,022 - +0.6 842,022 - +0.9 842,043 + -0.7 842,044 - -0.3 842,348 + -0.2 842,791 + Rv0751c 0.50 +0.9 843,008 + Rv0751c 0.75 +0.1 843,008 + Rv0751c 0.75 +0.3 843,211 + -0.0 843,211 + +0.2 843,212 - -0.4 843,243 + -0.7 843,372 + Rv0752c 0.11 +0.2 843,912 + Rv0752c 0.57 -0.1 843,912 + Rv0752c 0.57 +1.3 843,913 - Rv0752c 0.57 +0.4
Or see this region's nucleotide sequence