Experiment: 7H9 with Streptomycin 0.178 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0629c and Rv0630c overlap by 4 nucleotides Rv0630c and Rv0631c overlap by 1 nucleotides
Rv0629c: Rv0629c - Probable exonuclease V (alpha chain) RecD (exodeoxyribonuclease V alpha chain) (exodeoxyribonuclease V polypeptide), at 720,005 to 721,732
Rv0629c
Rv0630c: Rv0630c - Probable exonuclease V (beta chain) RecB (exodeoxyribonuclease V beta chain)(exodeoxyribonuclease V polypeptide) (chi-specific endonuclease), at 721,729 to 725,013
Rv0630c
Rv0631c: Rv0631c - Probable exonuclease V (gamma chain) RecC (exodeoxyribonuclease V gamma chain)(exodeoxyribonuclease V polypeptide), at 725,013 to 728,306
Rv0631c
Position (kb) 721
722
723
724
725
726 Strain fitness (log2 ratio) -2
-1
0
1
2 at 721.713 kb on + strand at 721.868 kb on + strand at 722.045 kb on + strand at 722.160 kb on - strand, within Rv0630c at 722.856 kb on + strand, within Rv0630c at 722.987 kb on + strand, within Rv0630c at 722.988 kb on - strand, within Rv0630c at 722.988 kb on - strand, within Rv0630c at 723.077 kb on + strand, within Rv0630c at 723.078 kb on - strand, within Rv0630c at 723.105 kb on - strand, within Rv0630c at 724.097 kb on + strand, within Rv0630c at 724.098 kb on - strand, within Rv0630c at 724.490 kb on + strand, within Rv0630c at 724.535 kb on + strand, within Rv0630c at 724.536 kb on - strand, within Rv0630c at 725.315 kb on - strand at 725.503 kb on + strand, within Rv0631c at 725.852 kb on - strand, within Rv0631c
Per-strain Table
Position Strand Gene LocusTag Fraction 7H9 with Streptomycin 0.178 ug/mL remove 721,713 + +0.9 721,868 + -0.0 722,045 + +0.1 722,160 - Rv0630c 0.13 +0.3 722,856 + Rv0630c 0.34 +0.4 722,987 + Rv0630c 0.38 +0.9 722,988 - Rv0630c 0.38 -2.6 722,988 - Rv0630c 0.38 +0.4 723,077 + Rv0630c 0.41 +0.2 723,078 - Rv0630c 0.41 +0.9 723,105 - Rv0630c 0.42 -0.5 724,097 + Rv0630c 0.72 +0.0 724,098 - Rv0630c 0.72 -0.4 724,490 + Rv0630c 0.84 +2.5 724,535 + Rv0630c 0.85 -0.9 724,536 - Rv0630c 0.85 +0.6 725,315 - -0.2 725,503 + Rv0631c 0.15 -0.1 725,852 - Rv0631c 0.25 +0.7
Or see this region's nucleotide sequence