Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv3542c

Experiment: 7H9 with Streptomycin 0.178 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	7H9 with Streptomycin 0.178 ug/mL
3,980,245	-		Rv3540c	0.64	-0.6
3,980,795	+		Rv3541c	0.35	-0.3
3,981,094	+				+0.3
3,981,113	+				-0.4
3,981,165	+		Rv3542c	0.13	-0.8
3,981,280	+		Rv3542c	0.25	-0.1
3,981,429	-		Rv3542c	0.41	-1.3
3,981,649	+		Rv3542c	0.65	-1.1
3,982,134	+		Rv3543c	0.13	-0.0
3,982,377	+		Rv3543c	0.34	+0.4
3,982,378	-		Rv3543c	0.34	-0.4
3,982,506	+		Rv3543c	0.45	-1.5