Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv3527

Experiment: 7H9 with Streptomycin 0.178 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	7H9 with Streptomycin 0.178 ug/mL
3,962,748	+		Rv3526	0.27	+0.1
3,962,749	-		Rv3526	0.27	+0.5
3,962,749	-		Rv3526	0.27	+0.8
3,962,749	-		Rv3526	0.27	+0.1
3,962,749	-		Rv3526	0.27	+0.0
3,962,973	-		Rv3526	0.46	-0.5
3,962,973	-		Rv3526	0.46	+0.0
3,962,973	-		Rv3526	0.46	-0.2
3,962,988	+		Rv3526	0.47	-0.7
3,963,012	+		Rv3526	0.49	+0.6
3,963,051	+		Rv3526	0.53	+0.7
3,963,099	+		Rv3526	0.57	-0.5
3,963,099	+		Rv3526	0.57	+0.7
3,963,184	-		Rv3526	0.64	-0.5
3,963,279	-		Rv3526	0.72	-1.0
3,963,418	-		Rv3526	0.84	+1.0
3,963,435	+		Rv3526	0.86	+0.2
3,963,807	-		Rv3527	0.45	-1.2
3,964,026	-				-0.4
3,964,152	-				+1.4
3,964,152	-				+0.2
3,964,152	-				+0.2
3,964,152	-				+2.0
3,964,152	-				-0.9
3,964,276	-				-0.2
3,964,793	+		Rv3528c	0.44	-0.5
3,964,826	-		Rv3528c	0.49	+0.2
3,964,829	+		Rv3528c	0.49	+0.1
3,964,838	+		Rv3528c	0.50	-0.3
3,964,839	-		Rv3528c	0.50	+1.6
3,964,946	+		Rv3528c	0.65	+0.2
3,965,014	-		Rv3528c	0.75	-0.7