Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv3515c

Experiment: 7H9 with Streptomycin 0.178 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	7H9 with Streptomycin 0.178 ug/mL
3,950,108	-				+0.3
3,950,117	-				+0.6
3,950,125	+				+0.4
3,950,351	+				+0.1
3,950,402	+				+0.4
3,950,402	+				-0.5
3,950,402	+				-0.3
3,950,402	+				+0.2
3,950,403	-				+1.5
3,950,410	-				+1.3
3,950,611	-				+0.3
3,950,622	-				+1.6
3,950,690	-				+1.1
3,950,690	-				+0.2
3,950,720	+				+2.0
3,950,720	+				-1.6
3,950,720	+				+0.4
3,950,720	+				+0.1
3,951,839	+		Rv3515c	0.62	+0.6
3,951,840	-		Rv3515c	0.62	+0.6
3,951,953	+		Rv3515c	0.69	-0.4
3,951,953	+		Rv3515c	0.69	+0.9
3,951,962	+		Rv3515c	0.69	+2.0
3,951,962	+		Rv3515c	0.69	+1.6
3,951,962	+		Rv3515c	0.69	-0.2
3,951,963	-		Rv3515c	0.69	+1.5
3,951,963	-		Rv3515c	0.69	+0.7
3,952,093	+		Rv3515c	0.77	-0.2
3,952,093	+		Rv3515c	0.77	+0.1
3,952,093	+		Rv3515c	0.77	-0.3
3,952,094	-		Rv3515c	0.77	+0.3
3,952,094	-		Rv3515c	0.77	+0.1
3,952,185	-		Rv3515c	0.83	-0.6
3,952,290	-		Rv3515c	0.89	+0.2
3,952,290	-		Rv3515c	0.89	+1.3
3,952,356	+				+0.1
3,952,374	-				+0.9
3,952,453	-				+0.2
3,952,453	-				+0.6
3,952,797	-		Rv3516	0.32	-0.9
3,953,130	+		Rv3516	0.74	+0.5