Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv3510c

Experiment: 7H9 with Streptomycin 0.178 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	7H9 with Streptomycin 0.178 ug/mL
3,937,588	-		Rv3509c	0.46	+0.4
3,937,748	-		Rv3509c	0.56	+3.0
3,938,117	+		Rv3509c	0.80	+0.2
3,938,118	-		Rv3509c	0.80	+0.3
3,938,252	+		Rv3509c	0.89	-0.0
3,938,253	-		Rv3509c	0.89	+2.0
3,938,323	+				+1.0
3,938,565	-		Rv3510c	0.17	+0.8
3,938,641	+		Rv3510c	0.26	+0.6
3,938,641	+		Rv3510c	0.26	+0.4
3,938,641	+		Rv3510c	0.26	+1.0
3,938,660	-		Rv3510c	0.29	+0.5
3,938,711	-		Rv3510c	0.35	-0.4
3,938,770	+		Rv3510c	0.42	+0.6
3,938,770	+		Rv3510c	0.42	-0.1
3,938,771	-		Rv3510c	0.42	+0.5
3,938,771	-		Rv3510c	0.42	+0.7
3,938,872	+		Rv3510c	0.54	+0.4
3,938,873	-		Rv3510c	0.54	+0.2
3,938,876	-		Rv3510c	0.54	+2.6
3,938,876	-		Rv3510c	0.54	+0.3
3,938,905	-		Rv3510c	0.58	-0.7
3,939,203	+				+0.4
3,939,291	+				+1.3
3,939,332	+				+0.6
3,939,332	+				+1.9
3,939,333	-				+1.1
3,939,333	-				+0.5
3,939,397	-				+0.6
3,939,397	-				+0.2
3,939,505	+				-0.1
3,939,527	+				+0.4
3,939,527	+				+0.6
3,939,528	-				+0.3
3,939,546	+				+0.5
3,939,590	+				+0.8
3,939,591	-				+0.8
3,939,669	+				-0.6
3,939,669	+				+0.7
3,939,669	+				+1.4
3,939,784	+				+0.2
3,939,785	-				+0.3
3,939,788	+				+1.0
3,939,788	+				+0.6
3,939,788	+				+0.5
3,939,788	+				+0.8
3,939,801	-				-0.0
3,939,875	+		Rv3511	0.12	+0.9
3,939,875	+		Rv3511	0.12	-0.5
3,939,876	-		Rv3511	0.12	+1.1
3,939,876	-		Rv3511	0.12	+1.3
3,939,913	-		Rv3511	0.14	+1.2
3,940,168	-		Rv3511	0.26	+0.4
3,940,168	-		Rv3511	0.26	-0.2
3,940,170	-		Rv3511	0.26	+1.3