Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv2940c

Experiment: 7H9 with Streptomycin 0.178 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	7H9 with Streptomycin 0.178 ug/mL
3,275,500	+		Rv2939	0.43	+1.0
3,275,501	-		Rv2939	0.43	+0.8
3,275,501	-		Rv2939	0.43	+0.1
3,275,513	+		Rv2939	0.44	+0.6
3,275,513	+		Rv2939	0.44	+0.5
3,275,513	+		Rv2939	0.44	+1.2
3,275,513	+		Rv2939	0.44	+0.9
3,275,513	+		Rv2939	0.44	+0.6
3,275,513	+		Rv2939	0.44	+0.9
3,275,513	+		Rv2939	0.44	-1.0
3,275,513	+		Rv2939	0.44	+0.6
3,275,513	+		Rv2939	0.44	+0.3
3,275,513	+		Rv2939	0.44	+0.3
3,275,514	-		Rv2939	0.45	+2.0
3,275,514	-		Rv2939	0.45	+1.3
3,275,514	-		Rv2939	0.45	+0.3
3,275,520	-		Rv2939	0.45	+0.5
3,275,520	-		Rv2939	0.45	+1.6
3,275,738	+		Rv2939	0.62	+2.4
3,275,764	-		Rv2939	0.64	+0.6
3,275,791	+		Rv2939	0.66	+0.8
3,275,791	+		Rv2939	0.66	-0.1
3,275,792	-		Rv2939	0.66	+0.6
3,275,792	-		Rv2939	0.66	+1.1
3,275,839	+		Rv2939	0.70	+1.0
3,275,962	-		Rv2939	0.80	+0.6
3,276,040	+		Rv2939	0.86	+1.0
3,276,040	+		Rv2939	0.86	+0.8
3,276,041	-		Rv2939	0.86	+0.9
3,276,053	+		Rv2939	0.87	-0.2
3,276,054	-		Rv2939	0.87	-0.0
3,276,084	-		Rv2939	0.89	+0.4
3,276,084	-		Rv2939	0.89	+1.3
3,276,098	+				+0.6
3,276,165	+				+0.8
3,276,166	-				+0.8
3,276,197	+				+0.9
3,276,197	+				-0.1
3,276,514	+				+0.6
3,276,515	-				+0.7
3,276,515	-				+1.0
3,276,550	-				+0.8
3,276,550	-				+0.6
3,276,623	+				+0.4
3,276,822	+				+1.1
3,276,823	-				+1.0
3,276,823	-				+0.6
3,276,981	+				+0.1
3,277,071	-		Rv2940c	0.11	+0.4
3,277,071	-		Rv2940c	0.11	+1.1
3,277,416	+		Rv2940c	0.16	+1.3
3,277,416	+		Rv2940c	0.16	+1.5
3,277,416	+		Rv2940c	0.16	+0.8
3,277,417	-		Rv2940c	0.16	+1.0
3,277,417	-		Rv2940c	0.16	+0.8
3,277,471	+		Rv2940c	0.17	+0.4
3,277,563	+		Rv2940c	0.19	+0.9
3,277,563	+		Rv2940c	0.19	+0.9
3,277,677	+		Rv2940c	0.20	+1.5
3,277,677	+		Rv2940c	0.20	+0.6
3,277,678	-		Rv2940c	0.20	+0.7
3,277,678	-		Rv2940c	0.20	+0.7
3,277,678	-		Rv2940c	0.20	+0.2
3,277,678	-		Rv2940c	0.20	+0.6
3,277,678	-		Rv2940c	0.20	+3.4
3,277,680	+		Rv2940c	0.21	+2.4
3,277,681	-		Rv2940c	0.21	+0.0
3,277,828	+		Rv2940c	0.23	-0.3
3,277,893	+		Rv2940c	0.24	+0.9
3,277,893	+		Rv2940c	0.24	+0.4
3,277,893	+		Rv2940c	0.24	+0.4
3,277,894	-		Rv2940c	0.24	+0.7
3,277,894	-		Rv2940c	0.24	+0.8
3,278,073	+		Rv2940c	0.27	+0.0
3,278,456	-		Rv2940c	0.33	+0.9
3,278,532	+		Rv2940c	0.34	+0.3
3,278,532	+		Rv2940c	0.34	+0.7
3,278,532	+		Rv2940c	0.34	+0.6
3,278,532	+		Rv2940c	0.34	+2.0
3,278,532	+		Rv2940c	0.34	+0.1
3,278,532	+		Rv2940c	0.34	+0.4
3,278,533	-		Rv2940c	0.34	+0.7
3,278,533	-		Rv2940c	0.34	+0.9
3,278,654	+		Rv2940c	0.36	+1.5
3,278,672	+		Rv2940c	0.36	+0.6
3,278,735	+		Rv2940c	0.37	+1.3
3,278,880	+		Rv2940c	0.39	+0.8
3,278,880	+		Rv2940c	0.39	+1.0
3,278,881	-		Rv2940c	0.39	+0.8
3,278,881	-		Rv2940c	0.39	+0.2
3,279,081	-		Rv2940c	0.43	+0.8
3,279,309	+		Rv2940c	0.46	+0.9
3,279,310	-		Rv2940c	0.46	+0.8
3,279,310	-		Rv2940c	0.46	+0.2
3,279,310	-		Rv2940c	0.46	+0.8
3,279,339	+		Rv2940c	0.47	+1.0
3,279,339	+		Rv2940c	0.47	+0.8
3,279,340	-		Rv2940c	0.47	+0.6
3,279,456	+		Rv2940c	0.49	+0.6
3,279,571	+		Rv2940c	0.50	+0.5
3,279,654	+		Rv2940c	0.52	+1.6
3,279,919	+		Rv2940c	0.56	+1.3
3,279,919	+		Rv2940c	0.56	+0.5
3,279,920	-		Rv2940c	0.56	+0.6
3,280,295	-		Rv2940c	0.62	+1.0
3,280,401	+		Rv2940c	0.63	+0.6
3,280,453	-		Rv2940c	0.64	+1.3
3,280,453	-		Rv2940c	0.64	+0.3
3,280,455	+		Rv2940c	0.64	+1.0
3,280,455	+		Rv2940c	0.64	+1.0
3,280,455	+		Rv2940c	0.64	+1.1
3,280,456	-		Rv2940c	0.64	+0.5
3,280,456	-		Rv2940c	0.64	+0.8
3,280,457	-		Rv2940c	0.64	+1.1
3,280,514	+		Rv2940c	0.65	+0.7
3,280,621	+		Rv2940c	0.67	+0.6
3,281,152	-		Rv2940c	0.75	+0.6
3,281,262	+		Rv2940c	0.77	+0.5
3,281,263	-		Rv2940c	0.77	+1.0
3,281,316	-		Rv2940c	0.78	+1.0
3,281,316	-		Rv2940c	0.78	+0.7
3,281,316	-		Rv2940c	0.78	+1.0
3,281,316	-		Rv2940c	0.78	+0.6
3,281,369	+		Rv2940c	0.79	+0.3
3,281,509	+		Rv2940c	0.81	+0.7
3,281,510	-		Rv2940c	0.81	+1.5
3,281,724	+		Rv2940c	0.84	+0.5
3,281,725	-		Rv2940c	0.84	+0.6
3,281,841	+		Rv2940c	0.86	+1.2
3,281,842	-		Rv2940c	0.86	+0.7
3,282,218	+				+1.3
3,282,218	+				+0.2
3,282,218	+				+0.9
3,282,218	+				+1.0
3,282,219	-				+2.9
3,282,279	+				+0.1
3,282,279	+				+1.1
3,282,279	+				-0.3
3,282,280	-				+1.0
3,282,280	-				+0.8
3,282,280	-				+0.8
3,282,314	+				+1.5
3,282,314	+				+0.6
3,282,315	-				+0.9
3,282,315	-				+1.3
3,282,315	-				+1.0
3,282,321	+				+1.0
3,282,321	+				+0.8
3,282,321	+				+1.0
3,282,322	-				+0.5
3,282,322	-				+0.6
3,282,322	-				+1.1
3,282,322	-				+1.6
3,282,322	-				+1.6
3,282,467	-				+0.8
3,282,561	+				+0.0
3,282,561	+				+0.7
3,282,561	+				+0.7
3,282,561	+				+1.1
3,282,562	-				+1.5
3,282,562	-				+0.6
3,282,562	-				+0.9
3,282,564	+				+2.0
3,282,564	+				+0.3
3,282,715	+				+0.5
3,282,715	+				+0.7
3,282,715	+				+0.4
3,282,816	+				-1.1
3,282,816	+				+0.0
3,282,816	+				+0.6
3,282,817	-				-0.2
3,282,817	-				-0.3
3,282,817	-				+0.5
3,282,817	-				+0.2
3,282,817	-				-0.3
3,282,817	-				+0.0
3,282,820	+				+0.7
3,282,821	-				-0.4
3,282,861	+				+0.6
3,282,861	+				-0.2
3,282,862	-				+0.0
3,282,862	-				-1.0
3,282,862	-				-0.1
3,282,898	+				-0.7
3,282,899	-				-1.0
3,282,901	+				+0.5
3,282,901	+				+0.4
3,283,053	-				-0.1
3,283,089	+				-0.1
3,283,089	+				-1.0
3,283,090	-				+0.2
3,283,409	+				+2.0
3,283,410	-				+2.1
3,283,416	+				+1.8
3,283,445	-				+0.2
3,283,467	+				+0.6
3,283,468	-				+0.6
3,283,557	+		Rv2941	0.13	+0.7
3,283,557	+		Rv2941	0.13	+0.2
3,283,558	-		Rv2941	0.13	+0.4
3,283,654	+		Rv2941	0.18	+1.0
3,283,688	+		Rv2941	0.20	+0.9
3,283,689	-		Rv2941	0.20	+0.2
3,283,689	-		Rv2941	0.20	+0.9
3,283,689	-		Rv2941	0.20	+0.8
3,283,689	-		Rv2941	0.20	+0.9
3,283,689	-		Rv2941	0.20	+0.5