Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv2124c

Experiment: 7H9 with Streptomycin 0.178 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	7H9 with Streptomycin 0.178 ug/mL
2,381,498	-		Rv2123	0.30	+0.4
2,381,698	+		Rv2123	0.44	+0.1
2,381,803	+		Rv2123	0.51	+0.5
2,381,827	+		Rv2123	0.53	+1.0
2,382,000	+		Rv2123	0.65	-0.1
2,382,502	+				+0.1
2,382,503	-				+0.4
2,382,561	+				-0.3
2,382,826	+				-1.3
2,383,087	+		Rv2124c	0.17	+0.1
2,383,087	+		Rv2124c	0.17	+0.2
2,383,088	-		Rv2124c	0.17	-0.8
2,383,088	-		Rv2124c	0.17	+0.3
2,383,264	+		Rv2124c	0.22	+0.5
2,383,425	-		Rv2124c	0.26	-0.4
2,383,452	-		Rv2124c	0.27	+0.5
2,383,796	-		Rv2124c	0.37	-0.4
2,383,924	+		Rv2124c	0.40	+0.2
2,383,924	+		Rv2124c	0.40	-0.0
2,383,944	+		Rv2124c	0.41	+0.2
2,383,944	+		Rv2124c	0.41	-0.2
2,384,152	-		Rv2124c	0.46	-0.5
2,384,230	+		Rv2124c	0.49	+2.1
2,384,231	-		Rv2124c	0.49	+1.1
2,385,097	+		Rv2124c	0.73	-0.3
2,385,625	+		Rv2124c	0.88	-0.1
2,385,646	+		Rv2124c	0.88	+0.3
2,385,703	+		Rv2124c	0.90	+0.6
2,385,703	+		Rv2124c	0.90	-0.8
2,385,973	-				-1.1
2,386,043	-				-0.2
2,386,221	+				-1.3
2,386,222	-				+0.1
2,386,281	+				-0.1
2,386,459	-		Rv2125	0.19	-0.4
2,386,459	-		Rv2125	0.19	+0.2
2,386,461	+		Rv2125	0.19	+0.0
2,386,462	-		Rv2125	0.19	+1.1
2,386,462	-		Rv2125	0.19	+1.2
2,386,467	+		Rv2125	0.20	-0.7
2,386,468	-		Rv2125	0.20	-0.3
2,386,782	+		Rv2125	0.56	+0.8
2,386,783	-		Rv2125	0.56	-1.1
2,386,875	+		Rv2125	0.66	-0.2
2,386,875	+		Rv2125	0.66	-1.5
2,386,876	-		Rv2125	0.66	+0.4
2,386,876	-		Rv2125	0.66	-0.0
2,386,876	-		Rv2125	0.66	-0.9