Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv1085c

Experiment: 7H9 with Streptomycin 0.178 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	7H9 with Streptomycin 0.178 ug/mL
1,209,073	+		Rv1084	0.71	+1.0
1,209,577	+				-0.2
1,209,577	+				+0.2
1,209,577	+				+0.6
1,209,578	-				+0.1
1,209,581	+				+1.2
1,209,867	+		Rv1085c	0.15	+0.8
1,209,874	+		Rv1085c	0.16	-0.2
1,209,875	-		Rv1085c	0.16	-0.6
1,209,964	+		Rv1085c	0.29	+0.3
1,209,994	+		Rv1085c	0.33	+0.6
1,209,995	-		Rv1085c	0.33	+0.4
1,210,133	-		Rv1085c	0.52	-0.5
1,210,133	-		Rv1085c	0.52	+0.6
1,210,133	-		Rv1085c	0.52	+0.8
1,210,222	+		Rv1085c	0.64	+0.8
1,210,264	+		Rv1085c	0.70	+0.5
1,210,358	-		Rv1085c	0.83	+0.6
1,210,535	+				+0.3
1,210,581	+				+0.9
1,210,581	+				-0.6
1,210,581	+				+1.4
1,210,582	-				+0.4
1,210,640	+				-1.4
1,211,335	-				-0.0
1,211,372	+				+2.0
1,211,401	+				+0.8
1,211,401	+				+1.3
1,211,401	+				+0.8