Experiment: 7H9 with Streptomycin 0.178 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0811c and Rv0812 are separated by 82 nucleotides Rv0812 and Rv0813c are separated by 45 nucleotides Rv0813c and Rv0814c are separated by 162 nucleotides Rv0814c and Rv0815c are separated by 1 nucleotides
Rv0811c: Rv0811c - Conserved protein, at 905,234 to 906,340
Rv0811c
Rv0812: Rv0812 - Probable amino acid aminotransferase, at 906,423 to 907,292
Rv0812
Rv0813c: Rv0813c - Conserved protein, at 907,338 to 908,018
Rv0813c
Rv0814c: Rv0814c - Conserved protein SseC2, at 908,181 to 908,483
Rv0814c
Rv0815c: Rv0815c - Probable thiosulfate sulfurtransferase CysA2 (rhodanese-like protein) (thiosulfate cyanide transsulfurase) (thiosulfate thiotransferase), at 908,485 to 909,318
Rv0815c
Position (kb) 907
908
909 Strain fitness (log2 ratio) -2
-1
0
1
2 at 906.351 kb on + strand at 907.274 kb on + strand at 907.294 kb on - strand at 907.326 kb on + strand at 907.377 kb on + strand at 907.378 kb on - strand at 907.378 kb on - strand at 907.414 kb on + strand, within Rv0813c at 907.414 kb on + strand, within Rv0813c at 907.575 kb on + strand, within Rv0813c at 907.575 kb on + strand, within Rv0813c at 907.576 kb on - strand, within Rv0813c at 907.576 kb on - strand, within Rv0813c at 907.647 kb on + strand, within Rv0813c at 907.648 kb on - strand, within Rv0813c at 907.648 kb on - strand, within Rv0813c at 907.663 kb on + strand, within Rv0813c at 907.664 kb on - strand, within Rv0813c at 907.664 kb on - strand, within Rv0813c at 907.711 kb on + strand, within Rv0813c at 907.712 kb on - strand, within Rv0813c at 907.756 kb on + strand, within Rv0813c at 908.068 kb on + strand at 908.125 kb on + strand at 908.125 kb on + strand at 908.125 kb on + strand at 908.125 kb on + strand at 908.200 kb on - strand at 908.200 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 7H9 with Streptomycin 0.178 ug/mL remove 906,351 + -0.2 907,274 + +1.6 907,294 - +0.6 907,326 + +0.4 907,377 + +0.4 907,378 - +0.5 907,378 - +0.3 907,414 + Rv0813c 0.11 +0.2 907,414 + Rv0813c 0.11 -0.3 907,575 + Rv0813c 0.35 -1.9 907,575 + Rv0813c 0.35 -0.4 907,576 - Rv0813c 0.35 -1.2 907,576 - Rv0813c 0.35 +0.4 907,647 + Rv0813c 0.45 +2.6 907,648 - Rv0813c 0.46 -0.2 907,648 - Rv0813c 0.46 +2.4 907,663 + Rv0813c 0.48 +0.0 907,664 - Rv0813c 0.48 -0.3 907,664 - Rv0813c 0.48 -0.2 907,711 + Rv0813c 0.55 +0.7 907,712 - Rv0813c 0.55 +0.1 907,756 + Rv0813c 0.61 +0.2 908,068 + -0.2 908,125 + -0.3 908,125 + -0.7 908,125 + -0.8 908,125 + +1.6 908,200 - -0.7 908,200 - -0.6
Or see this region's nucleotide sequence