Experiment: 7H9 with Streptomycin 0.178 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0272c and Rv0273c overlap by 4 nucleotides Rv0273c and Rv0274 are separated by 96 nucleotides Rv0274 and Rv0275c overlap by 71 nucleotides
Rv0272c: Rv0272c - Unknown protein, at 328,575 to 329,708
Rv0272c
Rv0273c: Rv0273c - Possible transcriptional regulatory protein, at 329,705 to 330,325
Rv0273c
Rv0274: Rv0274 - Conserved protein, at 330,422 to 331,003
Rv0274
Rv0275c: Rv0275c - Possible transcriptional regulatory protein (possibly TetR-family), at 330,933 to 331,658
Rv0275c
Position (kb) 329
330
331 Strain fitness (log2 ratio) -1
0
1
2
3 at 328.970 kb on + strand, within Rv0272c at 329.239 kb on + strand, within Rv0272c at 329.240 kb on - strand, within Rv0272c at 329.285 kb on + strand, within Rv0272c at 329.515 kb on + strand, within Rv0272c at 329.551 kb on + strand, within Rv0272c at 329.602 kb on + strand at 329.602 kb on + strand at 329.603 kb on - strand at 329.731 kb on - strand at 329.807 kb on - strand, within Rv0273c at 330.036 kb on + strand, within Rv0273c at 330.175 kb on - strand, within Rv0273c at 330.180 kb on + strand, within Rv0273c at 330.180 kb on + strand, within Rv0273c at 330.860 kb on + strand, within Rv0274 at 330.860 kb on + strand, within Rv0274 at 330.861 kb on - strand, within Rv0274 at 330.861 kb on - strand, within Rv0274 at 330.861 kb on - strand, within Rv0274 at 330.861 kb on - strand, within Rv0274 at 330.865 kb on - strand, within Rv0274 at 331.080 kb on + strand, within Rv0275c at 331.081 kb on - strand, within Rv0275c
Per-strain Table
Position Strand Gene LocusTag Fraction 7H9 with Streptomycin 0.178 ug/mL remove 328,970 + Rv0272c 0.35 -0.5 329,239 + Rv0272c 0.59 +0.3 329,240 - Rv0272c 0.59 -0.3 329,285 + Rv0272c 0.63 +0.6 329,515 + Rv0272c 0.83 +1.6 329,551 + Rv0272c 0.86 -0.0 329,602 + +0.1 329,602 + -0.1 329,603 - -0.4 329,731 - +3.0 329,807 - Rv0273c 0.16 -1.0 330,036 + Rv0273c 0.53 +0.5 330,175 - Rv0273c 0.76 +0.2 330,180 + Rv0273c 0.76 +1.1 330,180 + Rv0273c 0.76 -0.9 330,860 + Rv0274 0.75 +0.0 330,860 + Rv0274 0.75 +1.0 330,861 - Rv0274 0.75 +0.7 330,861 - Rv0274 0.75 -1.2 330,861 - Rv0274 0.75 +0.4 330,861 - Rv0274 0.75 +0.4 330,865 - Rv0274 0.76 +2.0 331,080 + Rv0275c 0.20 -1.3 331,081 - Rv0275c 0.20 +0.4
Or see this region's nucleotide sequence