Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv2921c

Experiment: 7H9 with para-aminosalicylic 0.086 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRv2920c and Rv2921c are separated by 364 nucleotidesRv2921c and Rv2922c are separated by 49 nucleotides Rv2920c: Rv2920c - Probable ammonium-transport integral membrane protein Amt, at 3,231,073 to 3,232,506 Rv2920c Rv2921c: Rv2921c - Probable cell division protein FtsY (SRP receptor) (signal recognition particle receptor), at 3,232,871 to 3,234,139 Rv2921c Rv2922c: Rv2922c - Probable chromosome partition protein Smc, at 3,234,189 to 3,237,806 Rv2922c Position (kb) 3232 3233 3234 3235Strain fitness (log2 ratio) -1 0 1at 3231.909 kb on + strand, within Rv2920cat 3232.176 kb on + strand, within Rv2920cat 3232.251 kb on - strand, within Rv2920cat 3232.310 kb on + strand, within Rv2920cat 3232.311 kb on - strand, within Rv2920cat 3232.311 kb on - strand, within Rv2920cat 3232.401 kb on - strandat 3232.583 kb on - strandat 3232.583 kb on - strandat 3232.583 kb on - strandat 3234.191 kb on - strandat 3234.277 kb on - strandat 3234.284 kb on - strandat 3235.017 kb on + strand, within Rv2922cat 3235.018 kb on - strand, within Rv2922c

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Per-strain Table

Position Strand Gene LocusTag Fraction 7H9 with para-aminosalicylic 0.086 ug/mL
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3,231,909 + Rv2920c 0.58 +0.7
3,232,176 + Rv2920c 0.77 -1.0
3,232,251 - Rv2920c 0.82 -0.3
3,232,310 + Rv2920c 0.86 -0.7
3,232,311 - Rv2920c 0.86 -0.1
3,232,311 - Rv2920c 0.86 -1.5
3,232,401 - -0.5
3,232,583 - -0.4
3,232,583 - +0.9
3,232,583 - +1.7
3,234,191 - +0.4
3,234,277 - -0.8
3,234,284 - -0.5
3,235,017 + Rv2922c 0.23 -0.3
3,235,018 - Rv2922c 0.23 -0.6

Or see this region's nucleotide sequence