Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv2782c

Experiment: 7H9 with para-aminosalicylic 0.086 ug/mL

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRv2781c and Rv2782c are separated by 60 nucleotidesRv2782c and Rv2783c overlap by 23 nucleotides Rv2781c: Rv2781c - Possible alanine rich oxidoreductase, at 3,087,950 to 3,088,984 Rv2781c Rv2782c: Rv2782c - Probable zinc protease PepR, at 3,089,045 to 3,090,361 Rv2782c Rv2783c: Rv2783c - Bifunctional protein polyribonucleotide nucleotidyltransferase GpsI: guanosine pentaphosphate synthetase + polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) (pnpase), at 3,090,339 to 3,092,597 Rv2783c Position (kb) 3089 3090 3091Strain fitness (log2 ratio) -1 0 1 2at 3088.173 kb on + strand, within Rv2781cat 3088.174 kb on - strand, within Rv2781cat 3088.521 kb on + strand, within Rv2781cat 3088.675 kb on - strand, within Rv2781cat 3088.701 kb on + strand, within Rv2781cat 3088.702 kb on - strand, within Rv2781cat 3088.704 kb on + strand, within Rv2781cat 3088.705 kb on - strand, within Rv2781cat 3088.735 kb on - strand, within Rv2781cat 3088.857 kb on + strand, within Rv2781cat 3089.217 kb on + strand, within Rv2782cat 3089.410 kb on - strand, within Rv2782cat 3090.063 kb on + strand, within Rv2782cat 3090.063 kb on + strand, within Rv2782cat 3090.067 kb on - strand, within Rv2782cat 3090.366 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 7H9 with para-aminosalicylic 0.086 ug/mL
remove
3,088,173 + Rv2781c 0.22 -0.8
3,088,174 - Rv2781c 0.22 -0.1
3,088,521 + Rv2781c 0.55 +0.9
3,088,675 - Rv2781c 0.70 +0.3
3,088,701 + Rv2781c 0.73 +0.3
3,088,702 - Rv2781c 0.73 +0.0
3,088,704 + Rv2781c 0.73 +0.3
3,088,705 - Rv2781c 0.73 -0.3
3,088,735 - Rv2781c 0.76 +0.5
3,088,857 + Rv2781c 0.88 +0.9
3,089,217 + Rv2782c 0.13 +1.1
3,089,410 - Rv2782c 0.28 +1.8
3,090,063 + Rv2782c 0.77 -0.4
3,090,063 + Rv2782c 0.77 +0.2
3,090,067 - Rv2782c 0.78 -0.4
3,090,366 - -0.4

Or see this region's nucleotide sequence