Experiment: 7H9 with para-aminosalicylic 0.086 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv2508c and Rv2509 are separated by 84 nucleotides Rv2509 and Rv2510c are separated by 3 nucleotides Rv2510c and Rv2511 are separated by 67 nucleotides Rv2511 and GFF2615 are separated by 49 nucleotides
Rv2508c: Rv2508c - Probable conserved integral membrane leucine and alanine rich protein, at 2,823,256 to 2,824,593
Rv2508c
Rv2509: Rv2509 - Probable short-chain type dehydrogenase/reductase, at 2,824,678 to 2,825,484
Rv2509
Rv2510c: Rv2510c - Conserved protein, at 2,825,488 to 2,827,089
Rv2510c
Rv2511: Rv2511 - Oligoribonuclease Orn, at 2,827,157 to 2,827,804
Rv2511
GFF2615 - tRNA-His, at 2,827,854 to 2,827,926
GFF2615
Position (kb)
2825
2826
2827
2828 Strain fitness (log2 ratio)
-1
0
1
2 at 2824.606 kb on - strand at 2824.606 kb on - strand at 2824.658 kb on + strand at 2824.659 kb on - strand at 2824.659 kb on - strand at 2825.482 kb on + strand at 2825.737 kb on + strand, within Rv2510c at 2825.957 kb on + strand, within Rv2510c at 2825.958 kb on - strand, within Rv2510c at 2826.255 kb on + strand, within Rv2510c at 2826.256 kb on - strand, within Rv2510c at 2826.615 kb on + strand, within Rv2510c at 2827.029 kb on - strand at 2827.090 kb on - strand at 2827.090 kb on - strand at 2827.103 kb on + strand at 2827.103 kb on + strand at 2827.103 kb on + strand at 2827.144 kb on + strand at 2828.006 kb on + strand at 2828.006 kb on + strand at 2828.007 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 7H9 with para-aminosalicylic 0.086 ug/mL remove 2,824,606 - -1.0 2,824,606 - -1.2 2,824,658 + -0.1 2,824,659 - +1.0 2,824,659 - -1.0 2,825,482 + +1.0 2,825,737 + Rv2510c 0.16 +0.0 2,825,957 + Rv2510c 0.29 +0.2 2,825,958 - Rv2510c 0.29 +0.4 2,826,255 + Rv2510c 0.48 +1.9 2,826,256 - Rv2510c 0.48 +0.4 2,826,615 + Rv2510c 0.70 -0.1 2,827,029 - -0.6 2,827,090 - -0.6 2,827,090 - -0.2 2,827,103 + -0.2 2,827,103 + -0.7 2,827,103 + -0.5 2,827,144 + -0.1 2,828,006 + -0.2 2,828,006 + +0.6 2,828,007 - +0.0
Or see this region's nucleotide sequence