Experiment: 7H9 with para-aminosalicylic 0.086 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0582 and Rv0583c are separated by 59 nucleotides Rv0583c and Rv0584 are separated by 153 nucleotides Rv0584 and Rv0585c are separated by 22 nucleotides
Rv0582: Rv0582 - Possible toxin VapC26. Contains PIN domain., at 677,922 to 678,329
Rv0582
Rv0583c: Rv0583c - Probable conserved lipoprotein LpqN, at 678,389 to 679,075
Rv0583c
Rv0584: Rv0584 - Possible conserved exported protein, at 679,229 to 681,862
Rv0584
Rv0585c: Rv0585c - Probable conserved integral membrane protein, at 681,885 to 684,272
Rv0585c
Position (kb) 679
680
681
682 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 678.555 kb on + strand, within Rv0583c at 678.555 kb on + strand, within Rv0583c at 678.766 kb on - strand, within Rv0583c at 678.885 kb on + strand, within Rv0583c at 678.886 kb on - strand, within Rv0583c at 678.900 kb on + strand, within Rv0583c at 678.901 kb on - strand, within Rv0583c at 678.940 kb on + strand, within Rv0583c at 678.941 kb on - strand, within Rv0583c at 679.210 kb on + strand at 679.218 kb on - strand at 679.319 kb on + strand at 679.479 kb on - strand at 679.487 kb on + strand at 679.488 kb on - strand at 679.488 kb on - strand at 679.494 kb on - strand, within Rv0584 at 679.658 kb on + strand, within Rv0584 at 679.659 kb on - strand, within Rv0584 at 679.662 kb on - strand, within Rv0584 at 679.662 kb on - strand, within Rv0584 at 679.669 kb on - strand, within Rv0584 at 679.802 kb on + strand, within Rv0584 at 679.803 kb on - strand, within Rv0584 at 679.803 kb on - strand, within Rv0584 at 679.803 kb on - strand, within Rv0584 at 679.886 kb on + strand, within Rv0584 at 679.931 kb on + strand, within Rv0584 at 680.051 kb on + strand, within Rv0584 at 680.051 kb on + strand, within Rv0584 at 680.051 kb on + strand, within Rv0584 at 680.052 kb on - strand, within Rv0584 at 680.340 kb on - strand, within Rv0584 at 680.513 kb on + strand, within Rv0584 at 680.513 kb on + strand, within Rv0584 at 680.558 kb on + strand, within Rv0584 at 680.559 kb on - strand, within Rv0584 at 680.684 kb on - strand, within Rv0584 at 680.834 kb on - strand, within Rv0584 at 680.834 kb on - strand, within Rv0584 at 680.888 kb on + strand, within Rv0584 at 680.939 kb on + strand, within Rv0584 at 680.939 kb on + strand, within Rv0584 at 681.060 kb on - strand, within Rv0584 at 681.060 kb on - strand, within Rv0584 at 681.104 kb on + strand, within Rv0584 at 681.111 kb on - strand, within Rv0584 at 681.111 kb on - strand, within Rv0584 at 681.225 kb on - strand, within Rv0584 at 681.381 kb on - strand, within Rv0584 at 681.558 kb on + strand, within Rv0584 at 681.558 kb on + strand, within Rv0584 at 681.754 kb on - strand at 681.780 kb on - strand at 681.788 kb on + strand at 681.788 kb on + strand at 681.789 kb on - strand at 681.812 kb on - strand at 681.886 kb on + strand at 682.251 kb on + strand, within Rv0585c at 682.252 kb on - strand, within Rv0585c at 682.386 kb on + strand, within Rv0585c at 682.739 kb on + strand, within Rv0585c at 682.762 kb on + strand, within Rv0585c at 682.780 kb on - strand, within Rv0585c
Per-strain Table
Position Strand Gene LocusTag Fraction 7H9 with para-aminosalicylic 0.086 ug/mL remove 678,555 + Rv0583c 0.24 -1.7 678,555 + Rv0583c 0.24 +0.0 678,766 - Rv0583c 0.55 -0.0 678,885 + Rv0583c 0.72 +1.0 678,886 - Rv0583c 0.72 +0.6 678,900 + Rv0583c 0.74 +0.1 678,901 - Rv0583c 0.75 +0.0 678,940 + Rv0583c 0.80 -1.0 678,941 - Rv0583c 0.80 -1.0 679,210 + -0.4 679,218 - +0.4 679,319 + -0.6 679,479 - +1.6 679,487 + -0.0 679,488 - -0.2 679,488 - -0.5 679,494 - Rv0584 0.10 +0.5 679,658 + Rv0584 0.16 +0.5 679,659 - Rv0584 0.16 -1.4 679,662 - Rv0584 0.16 -0.4 679,662 - Rv0584 0.16 +1.4 679,669 - Rv0584 0.17 +0.4 679,802 + Rv0584 0.22 +0.3 679,803 - Rv0584 0.22 -1.8 679,803 - Rv0584 0.22 -0.5 679,803 - Rv0584 0.22 +0.2 679,886 + Rv0584 0.25 -3.1 679,931 + Rv0584 0.27 -1.0 680,051 + Rv0584 0.31 +0.7 680,051 + Rv0584 0.31 +0.6 680,051 + Rv0584 0.31 +0.1 680,052 - Rv0584 0.31 +0.1 680,340 - Rv0584 0.42 +0.4 680,513 + Rv0584 0.49 +0.3 680,513 + Rv0584 0.49 -0.1 680,558 + Rv0584 0.50 -0.4 680,559 - Rv0584 0.50 -2.0 680,684 - Rv0584 0.55 +0.1 680,834 - Rv0584 0.61 +0.2 680,834 - Rv0584 0.61 +1.3 680,888 + Rv0584 0.63 +0.4 680,939 + Rv0584 0.65 +0.1 680,939 + Rv0584 0.65 +0.5 681,060 - Rv0584 0.70 +0.1 681,060 - Rv0584 0.70 +0.3 681,104 + Rv0584 0.71 +0.6 681,111 - Rv0584 0.71 -0.0 681,111 - Rv0584 0.71 +0.4 681,225 - Rv0584 0.76 +0.0 681,381 - Rv0584 0.82 -3.6 681,558 + Rv0584 0.88 -0.0 681,558 + Rv0584 0.88 +1.0 681,754 - +0.4 681,780 - -0.1 681,788 + -1.8 681,788 + -0.4 681,789 - -0.0 681,812 - +0.6 681,886 + -0.7 682,251 + Rv0585c 0.15 -0.9 682,252 - Rv0585c 0.15 +0.6 682,386 + Rv0585c 0.21 -0.4 682,739 + Rv0585c 0.36 -0.0 682,762 + Rv0585c 0.37 -0.2 682,780 - Rv0585c 0.37 -0.1
Or see this region's nucleotide sequence