Experiment: no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv3528c and Rv3529c are separated by 691 nucleotides Rv3529c and Rv3530c overlap by 1 nucleotides Rv3530c and Rv3531c overlap by 4 nucleotides
Rv3528c: Rv3528c - Unknown protein, at 3,964,479 to 3,965,192
Rv3528c
Rv3529c: Rv3529c - Conserved hypothetical protein, at 3,965,884 to 3,967,038
Rv3529c
Rv3530c: Rv3530c - Possible oxidoreductase, at 3,967,038 to 3,967,820
Rv3530c
Rv3531c: Rv3531c - Hypothetical protein, at 3,967,817 to 3,968,944
Rv3531c
Position (kb)
3965
3966
3967
3968 Strain fitness (log2 ratio)
-1
0
1 at 3964.946 kb on + strand, within Rv3528c at 3965.014 kb on - strand, within Rv3528c at 3965.204 kb on + strand at 3965.237 kb on - strand at 3965.443 kb on + strand at 3965.559 kb on - strand at 3965.838 kb on + strand at 3966.048 kb on + strand, within Rv3529c at 3966.049 kb on - strand, within Rv3529c at 3966.331 kb on + strand, within Rv3529c at 3966.479 kb on + strand, within Rv3529c at 3966.479 kb on + strand, within Rv3529c at 3966.479 kb on + strand, within Rv3529c at 3966.899 kb on + strand, within Rv3529c at 3967.459 kb on - strand, within Rv3530c at 3967.577 kb on - strand, within Rv3530c at 3967.609 kb on - strand, within Rv3530c at 3967.609 kb on - strand, within Rv3530c at 3967.902 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction no stress control remove 3,964,946 + Rv3528c 0.65 -0.1 3,965,014 - Rv3528c 0.75 +0.6 3,965,204 + +0.1 3,965,237 - -0.7 3,965,443 + +0.1 3,965,559 - -0.5 3,965,838 + -0.4 3,966,048 + Rv3529c 0.14 -0.1 3,966,049 - Rv3529c 0.14 +1.0 3,966,331 + Rv3529c 0.39 +0.1 3,966,479 + Rv3529c 0.52 +0.7 3,966,479 + Rv3529c 0.52 +0.5 3,966,479 + Rv3529c 0.52 -0.3 3,966,899 + Rv3529c 0.88 +0.2 3,967,459 - Rv3530c 0.54 +1.1 3,967,577 - Rv3530c 0.69 -0.5 3,967,609 - Rv3530c 0.73 +0.0 3,967,609 - Rv3530c 0.73 +0.3 3,967,902 + -0.5
Or see this region's nucleotide sequence